Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00410 ATGATGAGTTCCCCTACAGTTAGACGCGTTTCGGAATGTTTTATCAAGCCCATTGAAGGGTCAAACCATATCTGCTATTTAACCCCTTGGGATATTACTATGTTGTCTATGAACTACATCCAGAAGGGCCTCCTATTCAAAAAGCCCTCATCATCACTTGATAATCTGTTGGAGAAGCTCAAGCACTCCCTTTCTCTTGCCCTTTTCCATTTCTATCCCTTGGCTGGCCGCCTTGTCACTCAAAAAACCCAAGACCCTCCCTCTTATTCTATCTTCGTTGATTGCAAAAACAGTTCTGGTGCTAAATTTATCTATGCAACTTTAGACAATATCACAATATCCGACATCCTCTCCCCTATTGACTTTCCACCACTCCTTCAGTCACTGTTTGATCTCAACAGAGCAATCAACCACGATGGTCACACCTTGCCCTTGTTATCCATCCAAGTCACCCAACTTGTGGACGGTGTTTTTATTGGCTGTTCCATGAACCACTGTATCGGTGATGGGACTTCTTATTGGAACTTCTTTAATACATGGTCTCACATCTTTCAAGATGTTCCTATTTTACACCCACCCCTTCACAATCGTTGGTTTCCAGAGGGATGTGGTCCACTAATCAATCTTCCCTTCAAACATCATGATGACTTTATCGACAGATATGAATCACCCAAATTGAGGGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCGAAACTAAAAGCAAAGGCTAACTTACAATCAAATAGCACCGAAATCTCTTCGTATCAATCCTTATCAGCTCATGTTTGGAGATCCATAACTCGCGTGCGCGGCCTAACACATGATCAGAAAACAAGTTGTATGTTATATGTAAACAATCGACCAAGAATGGAACCTCCTCTGCCAAACGACTACTTTGGAACATCAATTAATTTGGTGAGTGCAGAGGCGAAGGCAGGGGAGTTGGTTCAGAATGATCTGGGATGGACAGCATGGAAGGTTCACCTTGCTGTTGCAAACTTTAACGACAGTGTGGTGCATCAATTGCTTAAAGATTGGTTACAATCTCCTCTTGTCTTCCAACCTAGTCTCCACTTTGATCCATGCAGTGTGGCGATGTCAAGTTCACCAAGGTTTAACATGTATGGGAATGAATTTGGAATGGGGAAAGCTGTGGCTGTTAGAAGTGGGTATGCTAACAAATTTGATGGTTGGGTGACAGCATATGAAGGATATGAAGGAGGGGGAAGCATAGATTTGGCTGTGTGCCTTTCGCCTGATGCAATGACAGCCTTGGAATCAGACCAGGAGTTTATGGAGGCAGTTTCTGAGTCCAATCCCCTCTACTAG 1335 0.4337 MMSSPTVRRVSECFIKPIEGSNHICYLTPWDITMLSMNYIQKGLLFKKPSSSLDNLLEKLKHSLSLALFHFYPLAGRLVTQKTQDPPSYSIFVDCKNSSGAKFIYATLDNITISDILSPIDFPPLLQSLFDLNRAINHDGHTLPLLSIQVTQLVDGVFIGCSMNHCIGDGTSYWNFFNTWSHIFQDVPILHPPLHNRWFPEGCGPLINLPFKHHDDFIDRYESPKLRERIFHFSAESIAKLKAKANLQSNSTEISSYQSLSAHVWRSITRVRGLTHDQKTSCMLYVNNRPRMEPPLPNDYFGTSINLVSAEAKAGELVQNDLGWTAWKVHLAVANFNDSVVHQLLKDWLQSPLVFQPSLHFDPCSVAMSSSPRFNMYGNEFGMGKAVAVRSGYANKFDGWVTAYEGYEGGGSIDLAVCLSPDAMTALESDQEFMEAVSESNPLY. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00410 444 Gene3D - 216 430 IPR023213 -
Seca8g00410 444 Pfam Transferase family 23 434 - -
Seca8g00410 444 Gene3D - 2 203 IPR023213 -
Seca8g00410 444 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 435 - -
Seca8g00410 444 FunFam Tryptamine hydroxycinnamoyl transferase 212 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00410 Seca-Chr8 4708834 4710168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00410 58 428 Monolignol Biosynthesis Gene Families AT5G48930 29.040 1.66e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00410 - - gmx:100788297 669.463