Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00405 ATGGAGGATAAGTTTGAGATGAATGAATTAGGATCAAGAGAAGTTTCTCAGATGAAGAAAGGTGCAGGAGGAAGAGGGAAAATAGAAATAAAGAGGATTGAGAACACAACGAATAGGCAAGTTACTTTCTGCAAACGCCGTAACGGTTTGCTGAAGAAAGCGTATGAATTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTGTTATCTTCTCAACCCGTGGCCGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATAGACAGGTATAAGAAAGCATCTGCTACTTCATCAAATGCAGAATCTGTATCTGAAGCTAATATACAGTTTTATCAGCAGGAATCATCCAAATTAAAAAGACAGATTAGAGACATTCAGAATCTAAACAGGCACATCCTTGGGGAAGCACTTAGCTCTTTGAGTTTAAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTCTAAGCAGAGTTAGATCCAGAAAGCATGAAACTTTGTTTGCGGAGGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTTTTTGCGAGCTAAGATAGCTGAATCTGAGAGAGGACAACAAGAGCAACCAAATATGATGGGAGGAAGTGTGTGCGAGTCATTACCTTCACAGTCGACATATGATCACCGTAATTTCTTCCCTGCCAATCTCCAACTCTAA 702 0.4031 MEDKFEMNELGSREVSQMKKGAGGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIDRYKKASATSSNAESVSEANIQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFAEVEFMQKREIELQNHNNFLRAKIAESERGQQEQPNMMGGSVCESLPSQSTYDHRNFFPANLQL. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00405 233 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Seca8g00405 233 MobiDBLite consensus disorder prediction 196 216 - -
Seca8g00405 233 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Seca8g00405 233 Coils Coil 109 132 - -
Seca8g00405 233 SUPERFAMILY SRF-like 24 100 IPR036879 GO:0003677|GO:0046983
Seca8g00405 233 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Seca8g00405 233 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Seca8g00405 233 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Seca8g00405 233 Gene3D - 35 134 IPR036879 GO:0003677|GO:0046983
Seca8g00405 233 Coils Coil 143 163 - -
Seca8g00405 233 CDD MADS_MEF2_like 24 100 IPR033896 GO:0000977|GO:0045944
Seca8g00405 233 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g00405 233 FunFam agamous-like MADS-box protein AGL11 35 118 - -
Seca8g00405 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 206 - -
Seca8g00405 233 Pfam K-box region 108 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g00405 233 MobiDBLite consensus disorder prediction 198 216 - -
Seca8g00405 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Seca8g00405 233 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00405 Seca-Chr8 4613421 4618867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00405 24 231 MADS-box Gene Family AT3G58780 72.897 4.20e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca8g00405 K-box 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00405 K09264 - gmx:100808734 352.829