Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00403 ATGGCTGCTTCCAGATGTTTTCCTCTAGGCCGTTCTCTGCTTGGTGGATTAAGCAATAGCTTCTCTGGTTTATTAACATCACATGAGCTGACACACAGCAATTTCTTATCACAGCAGCAACAACGCACCTTCATACAGATGAGGACTGTTCTGAAGGTCGTTGATAATTCAGGGGCTAAGAAGGTGATGTGCATACAAGCTTTGAAAGGGAAGAAAGGGGCAAGGTTAGGTGACACAATAGTAGCATCAGTGAAAGAGGCCCATCCTAATGGGAAAATAAAGAAAGGGAAGGTTGTGTATGGGGTGGTTGTGCGTGCAGCTATGCAAAGGGGAAGATGTGATGGAAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAACCTATTGGGACCAGAGTTTTTGGGCCAGTGCCACATGAGCTCAGGCAAAAGAAGCATGTCAAGATTCTTACTTTGGCAGGGCATATTGCTTAA 492 0.4553 MAASRCFPLGRSLLGGLSNSFSGLLTSHELTHSNFLSQQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKIKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00403 163 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 45 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g00403 163 SUPERFAMILY Ribosomal protein L14 45 162 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca8g00403 163 FunFam 50S ribosomal protein HLP, mitochondrial-like 44 163 - -
Seca8g00403 163 ProSitePatterns Ribosomal protein L14 signature. 101 127 IPR019972 -
Seca8g00403 163 Gene3D Ribosomal protein L14 44 163 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca8g00403 163 SMART Ribosomal_L14_2 44 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g00403 163 NCBIfam 50S ribosomal protein L14 45 162 IPR005745 GO:0003735|GO:0006412|GO:0015934
Seca8g00403 163 Pfam Ribosomal protein L14p/L23e 45 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca8g00403 163 Hamap 50S ribosomal protein L14 [rplN]. 44 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00403 Seca-Chr8 4600561 4602015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00403 55 146 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 37.374 2.67e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00403 K02874 - gmx:100818301 248.44