Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00400 ATGTTCTCAGCTGGGCGTTATGTTGCTCCAGAGGTCTATAGAAATGAGGAATATGATACCAAAGTGGATGTGTTTTCATTTGCTCTGATATTACAGGAGATGATTGAAGGCTGTCCACCGTTTTATACAAAGCCAGAAAATGAAGTTCCTAAAGCATATGTTGAAAATGAGCGCCCACCATTTAGAGCTCCACAAAAGCTTTATGCTTATGGATTGAAACAGTTAATTGAGGAATGTTGGGATGGAAAACCGTACAGAAGACCAACATTTAGGCAAATAATTGGGAGATTGGATGACATCAGCTACCATCTTGCTCAAAAAAGGCACTGGAAGACTCTGACTCCTACATGCTTACGGAATCTGGAGGCCCTGTTTAAGGGGTATCGCACAAATCCAAGTAGCCGATCATCCCGCACTACAACCAGATAA 429 0.4196 MFSAGRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYTKPENEVPKAYVENERPPFRAPQKLYAYGLKQLIEECWDGKPYRRPTFRQIIGRLDDISYHLAQKRHWKTLTPTCLRNLEALFKGYRTNPSSRSSRTTTR. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00400 142 Gene3D Transferase(Phosphotransferase) domain 1 3 134 - -
Seca8g00400 142 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00400 142 Pfam Protein tyrosine and serine/threonine kinase 6 96 IPR001245 GO:0004672|GO:0006468
Seca8g00400 142 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 105 - -
Seca8g00400 142 SUPERFAMILY Protein kinase-like (PK-like) 6 118 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00400 Seca-Chr8 4554964 4557765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00400 6 120 MAP Kinase Kinase Kinase AT4G18950 57.391 1.01e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Seca8g00400 PK_Tyr_Ser-Thr 1.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00400 - - gmx:100812598 228.409