Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00399 ATGGAAAACAGCAAGCTTCAGCCTCGTTTCTCGCTGGGAAGGCAATCCTCTCTGGCGCCGGAGCGCAGCAACGATGCCGGCGCCGGCGAGGGTTCTGTTTCGGGGGCGTTGGATCCATCTGTTCGATTGATGTATTTGGCGAACGAAGGGGACTTGGAAGGGATTAAGGAGTTGTTGGACGGAGGTAGTGACGTCAATTTCAGGGACATTGATGGCCGCACCGCTCTCCACGTCGCCGCCTGTCACCGCCGCACCGATGTTGTTGACTTGTTGCTTCAAAGAGGTGCTGAGGTCGACCCTCGAGATCGCTGGGGCAGCACACCTCTTGCAGATGCATTGTACTACAAAAATCATGATGTTGTCAAACTTTTGGAGAAACATGGTGCTAAACCCCCGATGGCTCCTATGCATGTCCAAAATGCTCGTGAAGTCCCAGAATATGAGATTGATCCTTCTGAACTTGATTTTACAAATAGTGTTTGCATAACGAAGGGAACTTTCCGGATTGCATTATGGCGTGGAATTCAAGTTGCTGTCAAAACACTTGGGGAGGAAGTGTTCAGTGATGATGATAAAGTAAGGGCATTTCATGATGAGCTTACACTACTTCAAAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCCGTAACACAAAGCACCCCAATGATGATTGTCACAGAGTTTCTACCCCAGGGGGATCTCCGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAATAATGGCTGTGAAGTTTGCACTTGATATTGCTAGGGGAATGAACTATTTGCATGAACATAAACCAGAAGCCATTATTCACCGAGATCTGGAGCCTTCGTATGTTTTTTTGCTCTCCTGCCCATCTAACTGA 876 0.4772 MENSKLQPRFSLGRQSSLAPERSNDAGAGEGSVSGALDPSVRLMYLANEGDLEGIKELLDGGSDVNFRDIDGRTALHVAACHRRTDVVDLLLQRGAEVDPRDRWGSTPLADALYYKNHDVVKLLEKHGAKPPMAPMHVQNAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGIQVAVKTLGEEVFSDDDKVRAFHDELTLLQKIRHPNVVQFLGAVTQSTPMMIVTEFLPQGDLRAYLKRKGALKPIMAVKFALDIARGMNYLHEHKPEAIIHRDLEPSYVFLLSCPSN. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00399 291 PIRSF ILK 2 289 - -
Seca8g00399 291 SMART ANK_2a 38 67 IPR002110 GO:0005515
Seca8g00399 291 SMART ANK_2a 71 100 IPR002110 GO:0005515
Seca8g00399 291 SMART ANK_2a 104 133 IPR002110 GO:0005515
Seca8g00399 291 Gene3D - 33 144 IPR036770 -
Seca8g00399 291 FunFam Integrin-linked protein kinase family 17 147 - -
Seca8g00399 291 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g00399 291 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Seca8g00399 291 ProSiteProfiles Protein kinase domain profile. 121 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00399 291 Gene3D Transferase(Phosphotransferase) domain 1 155 288 - -
Seca8g00399 291 SUPERFAMILY Protein kinase-like (PK-like) 161 285 IPR011009 -
Seca8g00399 291 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Seca8g00399 291 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 285 - -
Seca8g00399 291 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g00399 291 SUPERFAMILY Ankyrin repeat 42 134 IPR036770 -
Seca8g00399 291 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Seca8g00399 291 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Seca8g00399 291 Pfam Protein tyrosine and serine/threonine kinase 173 280 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00399 Seca-Chr8 4550611 4554544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00399 9 284 MAP Kinase Kinase Kinase AT3G58760 71.228 1.29e-147 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Seca8g00399 PK_Tyr_Ser-Thr 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00399 - - gmx:100795964 497.664