Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00395 ATGAATAAATCATGTTTTTTTAGCATTCTGTCATCAAATGCATTCACAGGAGCATTGCCATCTGCATTTTCCAAGTTGACCAAGTTGACTGATTTGAGGATAGGTGACAATAATTTCAATGGGAAGATACCTGATTTCATTAGTAAATGGGTATTGATTGAAAAGCTGCACATGCATGGTTGCTCTTTTGAGGGGCCCATTCCTTCAACCATTTCTGCCTTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGTAACAGAAGCTCTGCTTTCCCACCACTAAATAATATGAAATCCATGAAAACACTGATACTGAGAAAATGCATGATTAAAGGAGAGATCCCAGACTATATTGGGAGAATGGAAAAACTGAAAATCTTAGATTTGAGTTTCAATAGCTTGAGTGGAAAGATACCTGAATCTTTTACCCAACTTGACAAAGTGGACTACATGTATCTTACTGGGAACAAGCTATCAGGGACTATACCTGTCTGGGTCCTTGGAAATAACAAAAATATTGATGTCTCTTACAATAACTTCACCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCGTAAATGTTGTGGAGGGATACTCTTTATCTGCGGATACACAAAGTAAGATTCATCCGTGCCTAAAAAGGAACTTTCCATGCCCTGCATCAGTTAGCAAATATCATTACTCCCTGCACATTAATTGTGGTGGTAATGAAGCAAATATTAATGATCAAATTTATGAAGCTGACAGAGAAAGGAAAGGTGCTTCAATGTTATATTACACTGGTCAGGATTGGGCTCTCAGTAGCACAGGGAACTTCTTGGACAATGACATTGACTCTGATCCCTATACTGTGGCCAATACTTCTAGACTTCTTAATGTCTCTGCACTCAATTCAAAACTGTACACAACAGCTCGTGTTTCTGCCCTTGCTCTCACATACTATGGCCTCTGTCTAATAAATGGAAATTACACTGTTAAGCTTCACTTTGCAGAGATTATTTTCATCAATGATAGGTCATTTAACAGCCTTGGGAAGAGGGTGTTTGATGTCTACATCCAGGGGAAATTGGTGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAGGACATTTAATGCTACTGTTACAGAACATACTTTGAAGATTCACTTCTACTGGGCTGGAAAAGGAACCACTGGCATACCAACAAGAGGAGTTTATGGACCTCTAATATCTGCTATTTCAGTAAATCCTAATTTTAAACCTCCATCAGAGCATGGCAACAGAACTTATGTCATACTGGCAGTTAGCATAGTGGCTGGTGTTTTAGTTGTTCTTCTCACGGTGCTAGCTGTCATGAGGAGAAAGGGATGGTTAGGAGGCAAGGACCCAGTGTATAAAGAGCTTAGGGGTATAGATCTGCAGACGGGACTATTTACTTTGAGACAAATCAAAGTAGCAACCAAAAACTTTGATGCATCATATAAAATTGGTGAAGGTGGCTTTGGTTCAGTTTACAAGGGCCTACTATCAGATGGTACAGTAATTGCAGTAAAGCAGCTCTCTTCAAAATCTAAGCAAGGAAACCGTGAGTTTGTGAATGAGATAGGAATGATATCTGGACTTCAACATCCCAATCTTGTTAGGCTTTATGGATGCTGTGTAGAAGGGAACCAACTAATACTGATATATGAATATATGGAAAATAATTGTCTATCTCGCATTCTTTTTGGGAAGGATCAAGACAGCAGAAAGAAACTGGACTGGCCAACCAGGAAGAAAATTTGCCTTGGTATAGCTAGAGCTTTGGCTTATCTCCATGAAGAGTCTAGAATAAAAATCATTCATAGGGATATAAAGGCAAGTAATGTGTTGCTCGACAAGGATTTCAATGCCAAAATTTCAGATTTTGGTTTGGCAAAACTTATTGAAGATGACAAAACCCATGTTAGCACCAGAATTGCAGGAACAATTGGTTACATGGCTCCAGAGTATGCAATGCGTGGCTATTTAACTGACAAAGCAGATGTTTATAGCTTTGGGGTGGTTGCACTGGAAATTGTCAGTGGAAAAAGCAATACAAATTACAGGCCAAATGAGGATTTTGTTTACCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGAAATCTTCTGGAGCTGGTTGATCCAGATTTGGGTTCAGAATATCCAAGTGAGGAGGTGATGGTAATGCTAAATGTGGCTCTTTTATGTACTAATGCATCTCCTACACTAAGGCCAACAATGTCCCAAGCTGTGAGCATGCTTGAAGGTTGGACTGACATTCAGGATCTACTTTCTGATCCTGGATATTCAGCTGCTAGTTCCAGTTCCAAATATAAGAGTATGAGAAGTCACTTCTGGCAGAATCCAAGCAGAACACAAAGCATGTCAATACCAAGTGTATATACTAATTCCTCTTCCTCACATGCTGAAACAGATGAAAACTACCATCTTATAAAAAGTAACTCAAATGGATCAGACAAGTGA 2526 0.3943 MNKSCFFSILSSNAFTGALPSAFSKLTKLTDLRIGDNNFNGKIPDFISKWVLIEKLHMHGCSFEGPIPSTISALTRLSDLRITDLKGNRSSAFPPLNNMKSMKTLILRKCMIKGEIPDYIGRMEKLKILDLSFNSLSGKIPESFTQLDKVDYMYLTGNKLSGTIPVWVLGNNKNIDVSYNNFTWDSSSPTECQRGSVNVVEGYSLSADTQSKIHPCLKRNFPCPASVSKYHYSLHINCGGNEANINDQIYEADRERKGASMLYYTGQDWALSSTGNFLDNDIDSDPYTVANTSRLLNVSALNSKLYTTARVSALALTYYGLCLINGNYTVKLHFAEIIFINDRSFNSLGKRVFDVYIQGKLVLKDFDIQREAGGTGKPIVRTFNATVTEHTLKIHFYWAGKGTTGIPTRGVYGPLISAISVNPNFKPPSEHGNRTYVILAVSIVAGVLVVLLTVLAVMRRKGWLGGKDPVYKELRGIDLQTGLFTLRQIKVATKNFDASYKIGEGGFGSVYKGLLSDGTVIAVKQLSSKSKQGNREFVNEIGMISGLQHPNLVRLYGCCVEGNQLILIYEYMENNCLSRILFGKDQDSRKKLDWPTRKKICLGIARALAYLHEESRIKIIHRDIKASNVLLDKDFNAKISDFGLAKLIEDDKTHVSTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPNEDFVYLLDWAYVLQERGNLLELVDPDLGSEYPSEEVMVMLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDLLSDPGYSAASSSSKYKSMRSHFWQNPSRTQSMSIPSVYTNSSSSHAETDENYHLIKSNSNGSDK. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00395 841 CDD STKc_IRAK 502 770 - -
Seca8g00395 841 MobiDBLite consensus disorder prediction 801 841 - -
Seca8g00395 841 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 780 - -
Seca8g00395 841 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Seca8g00395 841 SMART serkin_6 496 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00395 841 Gene3D - 230 424 - -
Seca8g00395 841 SUPERFAMILY L domain-like 10 183 - -
Seca8g00395 841 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 50 198 - -
Seca8g00395 841 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 231 424 - -
Seca8g00395 841 Gene3D Ribonuclease Inhibitor 3 198 IPR032675 -
Seca8g00395 841 SUPERFAMILY Protein kinase-like (PK-like) 480 802 IPR011009 -
Seca8g00395 841 ProSiteProfiles Protein kinase domain profile. 496 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00395 841 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 466 571 - -
Seca8g00395 841 Gene3D Phosphorylase Kinase; domain 1 470 571 - -
Seca8g00395 841 Pfam Malectin domain 233 419 IPR021720 -
Seca8g00395 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Seca8g00395 841 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 805 - -
Seca8g00395 841 Gene3D Transferase(Phosphotransferase) domain 1 572 780 - -
Seca8g00395 841 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Seca8g00395 841 Pfam Protein tyrosine and serine/threonine kinase 500 767 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00395 Seca-Chr8 4518407 4525534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00395 32 832 Receptor kinase-like Gene Family AT1G07650 65.142 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g00395 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00395 - - vun:114195543 1440.63