Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00371 ATGATTGGTGAAGGAGGCTTTGGGAAGGTATACAAAGGACGAATTAAAAGCATAAATAAGGTAGTTGCTGTGAAGCAACTTAATAGGAATGGATACCAAGGAAGCAGGGAATTTGTTGTAGAGGTTTTGATTTTGAGTCTCTTGGACCACCCTAACCTTGTCAATTTGGTAGGGTATTGTGCAGATGGTGATCAAAGGATTTTGGTATATGAGTACATGGAGAATGGTTCTTTAGAAGATCACCTTCTTGAACTACCTTCGGACAGAAAGCCCTTGGACTGGCATACTAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATTTACATGAAGTAGCAAATCCACCAGTGATATATCGTGATTTCAAAGCATCAAACATATTATTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAGACACATGTAACCACCAGGGTGATGGGAACTTATGGCTATTGTGCACCTGAGTATGCCTCAACAGGTCAATTGACTACAAAATCAGATGTATACAGCTTTGGAGTAGTGCTTTTAGAAATTATCACAGGAAAAAGAGTGCTTGATTTTTCAAGACCAGCTGCAGAGCAAAACTTAGTCACTTGGGCACAACCACTACTCAGAGACAGAAGGAAATTTGCATTAATGGCTGATCCAATGTTAGAAGGAAACTACCCCATAAAGGGTCTATACCAAGCAGTGGCAGTTGCAGCAATGTGTCTTCAGGAGGAAGCTGATACTCGACCTTTGATTAGTGACGTAGTTACAGCTCTAAATGTCTTAGCTAATAATAAGCATGTAGAAGTGGGTAAACAACAACATACAAAAAAGACTCATTTTGAGGAAGGAGAATGTAGTTGA 897 0.3958 MIGEGGFGKVYKGRIKSINKVVAVKQLNRNGYQGSREFVVEVLILSLLDHPNLVNLVGYCADGDQRILVYEYMENGSLEDHLLELPSDRKPLDWHTRMKIAEGAAKGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVTTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVLLEIITGKRVLDFSRPAAEQNLVTWAQPLLRDRRKFALMADPMLEGNYPIKGLYQAVAVAAMCLQEEADTRPLISDVVTALNVLANNKHVEVGKQQHTKKTHFEEGECS. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00371 298 Pfam Protein kinase domain 2 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00371 298 ProSitePatterns Protein kinases ATP-binding region signature. 2 25 IPR017441 GO:0005524
Seca8g00371 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca8g00371 298 PIRSF ILK 1 293 - -
Seca8g00371 298 FunFam Serine/threonine-protein kinase PBS1 73 290 - -
Seca8g00371 298 PANTHER OS07G0668900 PROTEIN 1 279 - -
Seca8g00371 298 SUPERFAMILY Protein kinase-like (PK-like) 1 278 IPR011009 -
Seca8g00371 298 CDD STKc_IRAK 2 271 - -
Seca8g00371 298 ProSiteProfiles Protein kinase domain profile. 1 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00371 298 Gene3D Phosphorylase Kinase; domain 1 2 73 - -
Seca8g00371 298 Gene3D Transferase(Phosphotransferase) domain 1 74 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00371 Seca-Chr8 4239972 4243216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00371 1 274 Glycoside Hydrolase AT3G07070 72.628 1.02e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca8g00371 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00371 - - gmx:100797557 518.079