Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00345 ATGAGAAGACCGAAATCGAAGGACTTTAAGAAGCAACACCGTGCCTCAGAAGAGGAGGAGATAAAGCTCTTGGATTTATGGATCCAAAGCCAGAAACCAGACTCTGGTTCAAACCCAATGTCTCTTCCTCCTCTCCCCAAAAACTCCCCCATTGGGCGCCTTGACGATAACACCTTCTCGCGCTATGCTGGTGTTAAGAGCTTTGTCCACTTGCCCCTCTCCAACAGAACCAAAGATGGCTTGCGAGAAGCCAAGTTCGTTTCTATGACCGACATACAGAGAGCTTCTCTTCCCCATGCCCTTTGTGGTCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGCAAAACCCTCGCTTTCATTATCCCTGTGAGTGCTTCACTTGATTTTAGGGTTAGGATTCCCTTGGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATTATATCACCTACAAGAGAATTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAATGAACTCAACATATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCAAAGCGCAGACAAACCTTGCTTTTCTCAGCAACTCAAACAAAATCGATCCAAGATCTTGCAAGACTAAGTTTGAAGGATCCAGAGTATCTGAGCGTGCACGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCCCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCAAAAATACTTGTTTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCACTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAAAAGCGTTCAGTTCTCTTCTCCACTGATGTGGCTGCAAGAGGACTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGGTGGAAAGTCAGTTTTATTTCTACTGCCTTCAGAAATTCAAATGCTTGAAAGGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAACAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTTTGTTGGCATCTTTACTGGCCAAGTACCCAGACCTGCAGCATCGGGCCCAAAGGGCATTTGTCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTAATGAAACTGCCTATTGATGAATATTCAGCATCATTAGGTTTGCCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGTGTCAACAAAATCAGTTTTAGTTGAACCAGAGGATGCAGACAAGGAAAATGTCTTGGAGGTTTCAGGAAAGAAGATAGACAATGTTGTTTTCAAAGATGAGGAAACTGAAAATGATCTTCTTCAGGCAGCCGATACCTTAAATGAAGGCGAATTGAAGTCATCTGAAATTGGAGAAATAATACCAGCAACTCGTGTATTGAAGAAAAAGAAGCTTAAGATTAATGTACATAGACCACTGGGGACTAGGGTTGTATTTGACGATGAAGGCAACACACTTCCTCCACTAGCTAGGATTGCTGACACACAAAGTGGCAAGGAAACATTGCTACTTGACCCAGACCAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTAAAAAAGGCAGACAAGGAAGACAAACTTCTAGAACGTCAGCGGCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGTCAGGGAATGTGGAAGAAGAGGACGACCAAGTTGATATTTCTGGGTCAGAAGATGAAACTGTAGATAGACGACATAAAAAGAGTAAAGTATACTTCAATAGCGACAGTGATGAGGGTGAAAGAAATGAAGTCACAGGGAATGCAGGTATTAGTGCTGGCTCCATTACTTTGGAGGAGCAAGAAGCGCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2280 0.4232 MRRPKSKDFKKQHRASEEEEIKLLDLWIQSQKPDSGSNPMSLPPLPKNSPIGRLDDNTFSRYAGVKSFVHLPLSNRTKDGLREAKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVSASLDFRVRIPLVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKAAKVPVHFNKPRKELLQPVSGLLASLLAKYPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTKSVLVEPEDADKENVLEVSGKKIDNVVFKDEETENDLLQAADTLNEGELKSSEIGEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKETLLLDPDQKAEYYKRMREDLKKADKEDKLLERQRRREKRIKQKMKWKSGNVEEEDDQVDISGSEDETVDRRHKKSKVYFNSDSDEGERNEVTGNAGISAGSITLEEQEALALKLLNSMHS. 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00345 759 Coils Coil 652 672 - -
Seca8g00345 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 469 IPR001650 -
Seca8g00345 759 PANTHER RNA HELICASE 41 580 - -
Seca8g00345 759 Gene3D - 296 552 IPR027417 -
Seca8g00345 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 285 IPR014001 -
Seca8g00345 759 SMART DUF4217_3 460 523 IPR025313 -
Seca8g00345 759 Pfam Helicase conserved C-terminal domain 311 420 IPR001650 -
Seca8g00345 759 MobiDBLite consensus disorder prediction 702 728 - -
Seca8g00345 759 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Seca8g00345 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 441 IPR027417 -
Seca8g00345 759 Pfam DEAD/DEAH box helicase 90 273 IPR011545 GO:0003676|GO:0005524
Seca8g00345 759 MobiDBLite consensus disorder prediction 31 50 - -
Seca8g00345 759 MobiDBLite consensus disorder prediction 678 733 - -
Seca8g00345 759 CDD SF2_C_DEAD 299 430 - -
Seca8g00345 759 SMART helicmild6 338 421 IPR001650 -
Seca8g00345 759 SMART ultradead3 85 302 IPR014001 -
Seca8g00345 759 Gene3D - 53 291 IPR027417 -
Seca8g00345 759 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 231 239 IPR000629 -
Seca8g00345 759 CDD DEADc_DDX10 77 288 - -
Seca8g00345 759 Pfam Domain of unknown function (DUF4217) 465 521 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00345 Seca-Chr8 4015623 4021346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00345 65 438 Eukaryotic Initiation Factors Gene Family AT3G19760 27.660 1.94e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00345 K14776 - gmx:100792106 1273.46