Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00343 ATGAGTGTAGTGGGGTTTGACATTGGAAACGAGAACTGTGTTATTGCTGTAGTGAAGCAACGTGGGGTTGATATTTTATTGAATGATGAATCCAAACGTGAAACCCCTGCTGTGGTCTGCTTTGGAGAGAAGCAAAGGTTTTTAGGGTCAGATGGTGCTGCTTCTGCTATGATGCACCCCAAGTCCACAATATCTCAAGTGAAGAGACTAATAGGAAGGAGATTTGCAGACCCTGATGTTCAAAATGACCTGAAAATGCTACCTGTTGAAACTTCTGAAGGCCCAGATGGTGGCATTCTGATTCACTTAAAATACTTGAAGGAGACTCATACATTTAAACCGGTTCAAATAGTAGCAATGCTTTTTGCTCACTTGAAGACTATAGCTGAAAAAAATTTGGGGACCTCTGTTTCAGATTGTGTTATTGGGATTCCATCATACTTTACTGACTTGCAGAGACGGGCATATCTCAATGCAGCAACAATTGTTGGGTTGAAGCCTTTGAGGTTGATGCATGATTGCACCGCAACTGGTCTTGGTTATGGAGTTTACAAGACAGATTTTCCCAGGGCAGCTTCCATTTATGTTGCATTTATTGACATAGGCCACTGTGATACTCAAGTCTCTATTGCAGCATTTCAGGCTGGGAAAATGAAGATACTTTCACATGCTTTTGACAGGAGCTTAGGGGGTAGAGACTTTGATGAGGTTCTATTTAGTCATTTTGCAGCAAAACTTAAGGAACAGTACAGCATTGATGTGTACTCTAATGCCAGGGCATGTCTTAGGCTGCGGGCAGCATGTGAGAAGTTGAAGAAAGTTTTGAGTGCAAATGCAGAGGCACCTCTGAACATTGAGTGTTTGATGGATGAAAAAGATGTTAATGGATTTATCAAGAGGGAAGAATTTGAGAATCTGGTATCAGGATTATTGGAGAGAATTCGTGTTCCTTGCAACAAAGCATTAGCTGATGCAGGCTTGACCATAGAAAAGATTTATTCTGTTGAGTTAGTTGGTTCAGGTTCAAGGGTTCCAGCTATAACTAGATTATTAACTTCTCTATTTAAGAGAGAACCCAGCCGAACACTGAATGCAAGTGAGTGTGTAGCTCGTGGCTGTGCTCTACAGTGTGCAATGCTCAGTCCTATTTTCCGTGTTAGAGAATATGAGGTCCTGGATTCTTTTCCTTTTTCCATTGGACTTTCAGCAGATGGAGGTCTAATTTGTGCAGGATCAAATGGTGTACTTTTCCCAAGAGGCCAACCCATTCCAAGCGCTAAAGTTCTAACATTTCAATGCAGTAATTTGCTCCATTTGGAAGCATTCTATGCTAATCCAGATGAAATACCACATGGGACATCTCCTAAAATTAGTTGCTTCACAATTGGTCCTTTCCATGGATCCCATGGAAGTAAGATGAGAGTTAAAGTTAAAGTTAAAGTTCAACTAAATTTGCATGGCATTGTCAGTATTGAATCAGCTACATTGATCGGGGATCATTTGGATGATTCAGTTACAACAGGTGATCATTCAAATTCTAAAGCAATGGATGTTGAACCCGTTTCTGAGACAGTTGAAAATGTCATTGAAGATAGTATCAATAAAAAGTGTGAATCTCCGCATCGTTCTTCTGATGGTACAAGAAAAGATAAAGCTAACAGAAGGCTTCATGTACCAGTGAGTGAGAATATCTATGGTGGAATGACCAAGGCTGAGATCTCGGAAGCTCAAGAAAAGGAACTCCAGTTAACCCAGCAGGATAGAACAATGGAGCTAACCAAAGACAAGAGGAATTCCTTGGAGTCTTATGTTTATGAAATGAGGAGTAAGCTCTTCAACATATATCGGAGCTATGCAAGTGAACAAGAAAGGGATGGAATATCTAGGAGCCTGCAAGAGACTGAGGATTGGCTTTATGATGATGGTGATGATGAAACTTTCCATGCTTATTCTGCAAAACTAGAAGATCTAAAACAGCTGGTGGATCCGATTGAGAACAGGTATAAAGATGAAGAAGCAAGAGCGCAAGCTACAAGAGATTTGTTAAGTTGCATCGTAGAGCATCGCATGTCTGCAGATTCCCTCCCACCCGAAAATAAAGAGCAGATCATCAATGAATGCAATAAAGCAGAGCAGTGGCTAAGAGAGAAGATGCAGCAACAAGATACTTTGCCTAAGAGCTCTGATCCAGTATTTTGGTCAAGTGATATCAAGAGCAAGACAGAGGATTTGAAGTTGTATGAGGATGCCAACGGATATTGGGATCCAAGGATTCTCCAATTACAGAAGACAAAGGTGAAGACAAGCAGAATACTTCTAATCATCAATGAAGACAATGGCGTGGTGATACCCCATGAATTGAAGACCTAA 2370 0.408 MSVVGFDIGNENCVIAVVKQRGVDILLNDESKRETPAVVCFGEKQRFLGSDGAASAMMHPKSTISQVKRLIGRRFADPDVQNDLKMLPVETSEGPDGGILIHLKYLKETHTFKPVQIVAMLFAHLKTIAEKNLGTSVSDCVIGIPSYFTDLQRRAYLNAATIVGLKPLRLMHDCTATGLGYGVYKTDFPRAASIYVAFIDIGHCDTQVSIAAFQAGKMKILSHAFDRSLGGRDFDEVLFSHFAAKLKEQYSIDVYSNARACLRLRAACEKLKKVLSANAEAPLNIECLMDEKDVNGFIKREEFENLVSGLLERIRVPCNKALADAGLTIEKIYSVELVGSGSRVPAITRLLTSLFKREPSRTLNASECVARGCALQCAMLSPIFRVREYEVLDSFPFSIGLSADGGLICAGSNGVLFPRGQPIPSAKVLTFQCSNLLHLEAFYANPDEIPHGTSPKISCFTIGPFHGSHGSKMRVKVKVKVQLNLHGIVSIESATLIGDHLDDSVTTGDHSNSKAMDVEPVSETVENVIEDSINKKCESPHRSSDGTRKDKANRRLHVPVSENIYGGMTKAEISEAQEKELQLTQQDRTMELTKDKRNSLESYVYEMRSKLFNIYRSYASEQERDGISRSLQETEDWLYDDGDDETFHAYSAKLEDLKQLVDPIENRYKDEEARAQATRDLLSCIVEHRMSADSLPPENKEQIINECNKAEQWLREKMQQQDTLPKSSDPVFWSSDIKSKTEDLKLYEDANGYWDPRILQLQKTKVKTSRILLIINEDNGVVIPHELKT. 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00343 789 Gene3D - 5 374 - -
Seca8g00343 789 Gene3D - 38 113 - -
Seca8g00343 789 MobiDBLite consensus disorder prediction 534 554 - -
Seca8g00343 789 FunFam Heat shock 70 kDa protein 4 1 74 - -
Seca8g00343 789 Pfam Hsp70 protein 3 668 IPR013126 GO:0005524|GO:0140662
Seca8g00343 789 FunFam Heat shock 70 kDa protein 4 568 678 - -
Seca8g00343 789 FunFam Heat shock 70 kDa protein 4 230 313 - -
Seca8g00343 789 FunFam Heat shock 70 kDa protein 4 38 113 - -
Seca8g00343 789 PRINTS 70kDa heat shock protein signature 2 15 - -
Seca8g00343 789 PRINTS 70kDa heat shock protein signature 388 407 - -
Seca8g00343 789 PRINTS 70kDa heat shock protein signature 363 383 - -
Seca8g00343 789 PRINTS 70kDa heat shock protein signature 332 348 - -
Seca8g00343 789 PRINTS 70kDa heat shock protein signature 30 42 - -
Seca8g00343 789 PRINTS 70kDa heat shock protein signature 140 160 - -
Seca8g00343 789 Coils Coil 654 674 - -
Seca8g00343 789 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Seca8g00343 789 Gene3D - 186 360 - -
Seca8g00343 789 FunFam Heat shock 70 kDa protein 16 isoform A 387 566 - -
Seca8g00343 789 FunFam Heat shock 70 kDa protein 4 104 198 - -
Seca8g00343 789 CDD HSPA4_like_NDB 2 381 - -
Seca8g00343 789 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 601 IPR029047 -
Seca8g00343 789 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 537 IPR029047 -
Seca8g00343 789 Gene3D Actin; Chain A, domain 4 230 313 - -
Seca8g00343 789 PANTHER HSC70CB, ISOFORM G-RELATED 1 745 - -
Seca8g00343 789 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 570 668 IPR029048 -
Seca8g00343 789 SUPERFAMILY Actin-like ATPase domain 196 380 IPR043129 -
Seca8g00343 789 Gene3D - 568 680 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00343 Seca-Chr8 3982614 3987802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00343 4 431 Calmodulin-binding Proteins AT1G16030 34.339 9.63e-80 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00343 K09489 - gmx:100795914 1231.47