Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00334 ATGGAATGGATATGTCCTGCTGCTTCACAAGCCTATCAGTTGCATATCTACACAGGAGAAACAGCTTACAGAGGAGTATCACTCATTCATGATATCAGGGGAGTAACAGGGATGCCCCAGAATTTTATTATGAAGCTTCCTTTTCAGCAATTCAACTCCAACAAAATGATGAAGTTACACAATAAGTCATGCTGCTCAATTTGCTTTCAGGATTTCGAGGATGGAGAGTTGGTGAGAATACTTCCAAAATGTTGCCACCTTTTTCATTTAGAATGCATAGACAAGTGGTTAGTCCAACAAGGATCATGCCCAATGTGTAGAACTTATGTTCTTGACCACATTCATGAACAGTAG 354 0.3983 MEWICPAASQAYQLHIYTGETAYRGVSLIHDIRGVTGMPQNFIMKLPFQQFNSNKMMKLHNKSCCSICFQDFEDGELVRILPKCCHLFHLECIDKWLVQQGSCPMCRTYVLDHIHEQ. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00334 117 Pfam Ring finger domain 65 107 IPR001841 -
Seca8g00334 117 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 108 IPR044523 -
Seca8g00334 117 SUPERFAMILY RING/U-box 58 112 - -
Seca8g00334 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 111 IPR013083 -
Seca8g00334 117 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
Seca8g00334 117 SMART ring_2 65 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00334 Seca-Chr8 3901472 3903282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00334 36 110 C3H Transcription Factor Family AT2G20030 45.333 1.24e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00334 - K19041 gmx:100305612 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00334 8 3901472 3903282 Seca8g00334 8 3901472 3903282 ECH