Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00333 ATGAAGAGGGAGATTCAAATTATGCAACATTTGAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAACAATCGGTTCATGTTGTTATGGAGCTTTGTGCAGGTGGTGAGCTTTTTGATAGGATTATTGCAAAGGGGCACTATAGTGAAAGGGCTGCAGCTTCAATATGTAGACAAATTGTTAATGTTGTTCATATTTGCCATTTTATGGGTGTGATGCATAGGGATCTCAAGCCAGAGAATTTCTTATTATCCAGTAAGGATGACAAGGCACTTCTCAAGGCCACAGATTTTGGCTTGTCAGTCTTCATTGAAGAAGGAAAGGTGTATCGGGATATAGTTGGCAGTGCTTATTATGTTGCTCCAGAAGTTCTGCGTCGTAAATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATGTTGTATATCTTACTTAGTGGTGTGCCTCCATTTTGGGCAGAGTCAGAAAAGGGAATATTTGATGCCATATTGGAAGGTCAGATTGATTTTCATAGTCATCCATGGCCAACCATATCAACCAGTGCTAAGGACCTTATTCGTAAGATGCTTATACAGGACCCAAAGAAACGCATTACTGCCACTCAGGTTCTAGAGCACCCCTGGCTTAAAGAAGGTGGAAATGCTCCTGACAAGCCAATAGACAGCGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTGAAAAAACTTGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAAATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACCGACAAAAGTGGTACAATCACCTATGAGGAACTAAGAGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCGACAGCTTATGGACGCTGCTGATGTAGATGGAAATGGAACAATTGATTACATAGAATTCATAACTGCCACAATGCATAGACACCGGTTAGAAAGAGATGAGCATCTTTTCCAGGCCTTCCAGTATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGTGATGAAGCTACAATAAGGGAAATTATATCCGAAGTTGACACAGATAATGATGGTAGAATCAATTATGAAGAATTTTGTACAATGATGAGGAGTGGAACTCAACAACAAGGAGGCAAGTTATTCTAA 1218 0.3982 MKREIQIMQHLSGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRKYGKEIDIWSAGVMLYILLSGVPPFWAESEKGIFDAILEGQIDFHSHPWPTISTSAKDLIRKMLIQDPKKRITATQVLEHPWLKEGGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLFQAFQYFDKDNSGFITRDELETAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQQGGKLF. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00333 405 Coils Coil 279 299 - -
Seca8g00333 405 Pfam Protein kinase domain 2 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00333 405 SUPERFAMILY Protein kinase-like (PK-like) 2 231 IPR011009 -
Seca8g00333 405 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Seca8g00333 405 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 389 - -
Seca8g00333 405 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Seca8g00333 405 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00333 405 SMART serkin_6 1 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00333 405 CDD EFh 333 394 IPR002048 GO:0005509
Seca8g00333 405 FunFam Calcium-dependent protein kinase 1 222 397 - -
Seca8g00333 405 ProSiteProfiles EF-hand calcium-binding domain profile. 257 292 IPR002048 GO:0005509
Seca8g00333 405 ProSiteProfiles EF-hand calcium-binding domain profile. 293 328 IPR002048 GO:0005509
Seca8g00333 405 Gene3D - 226 399 - -
Seca8g00333 405 SMART efh_1 368 396 IPR002048 GO:0005509
Seca8g00333 405 SMART efh_1 297 325 IPR002048 GO:0005509
Seca8g00333 405 SMART efh_1 333 361 IPR002048 GO:0005509
Seca8g00333 405 SMART efh_1 261 289 IPR002048 GO:0005509
Seca8g00333 405 SUPERFAMILY EF-hand 253 393 IPR011992 -
Seca8g00333 405 ProSiteProfiles EF-hand calcium-binding domain profile. 365 399 IPR002048 GO:0005509
Seca8g00333 405 ProSitePatterns EF-hand calcium-binding domain. 270 282 IPR018247 -
Seca8g00333 405 FunFam calcium-dependent protein kinase 1 42 221 - -
Seca8g00333 405 Gene3D Transferase(Phosphotransferase) domain 1 42 225 - -
Seca8g00333 405 Gene3D Phosphorylase Kinase; domain 1 1 41 - -
Seca8g00333 405 CDD STKc_CAMK 1 213 - -
Seca8g00333 405 ProSitePatterns EF-hand calcium-binding domain. 306 318 IPR018247 -
Seca8g00333 405 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Seca8g00333 405 Pfam EF-hand domain pair 332 394 IPR002048 GO:0005509
Seca8g00333 405 Pfam EF-hand domain pair 262 322 IPR002048 GO:0005509
Seca8g00333 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00333 Seca-Chr8 3864907 3869198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00333 1 405 EF-hand Containing Proteins AT3G20410 83.005 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g00333 Pkinase 8.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00333 K13412 - gmx:100794852 744.962