Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00330 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGGAGGAGGTTCAGGAATCTATTGATAAGTTGCAATCTACTTTTCACCAATGGGAAAACACTTCTGATGCTGGTGAGCGAGAGCATCTTGCAAAGGAAGTTCTTGCTGGTTGTGAAAGTATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGAACCTTCTTGGTATGGCATTGATGACGTGGAGATTGAAAATCGGAGGAGGTGGACCAGCAGTGCTCGCACCCAGGTGCGCACAATGAAGCAATCAGTGGAAGCTGGGAAGGGCTCAAATACAACAAATCATGCAAGTCCAAATGGGATGCACAGGGAATTAATGAGGCTTCCTGATTCTCATCAAACTGCATCCAACCAATATGCTGCCCGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAGATGCTTCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTCAGTATAAGTGTACAAAGAATTGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTTGCACAGGAAAAGATTATAGATGAACTGGGTAATGAGATGGACAGCACATCTAATCGTCTAGATTTTGTCCAAGTAAGTTTCTGCTTCTTATTTTCATTCTCTCATTACAAAGTGTTTATGATCTATCTGACTTTGAGACTGCTGTCATTAATTAATTAG 714 0.4174 MPSAQDPFYVVKEEVQESIDKLQSTFHQWENTSDAGEREHLAKEVLAGCESIEWQVDELDKAISVASREPSWYGIDDVEIENRRRWTSSARTQVRTMKQSVEAGKGSNTTNHASPNGMHRELMRLPDSHQTASNQYAARDNDDFIESESDRQMLLIKKQDEELDELSISVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQVSFCFLFSFSHYKVFMIYLTLRLLSLIN. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00330 237 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Seca8g00330 237 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 206 IPR000727 -
Seca8g00330 237 MobiDBLite consensus disorder prediction 97 116 - -
Seca8g00330 237 Coils Coil 12 32 - -
Seca8g00330 237 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Seca8g00330 237 FunFam syntaxin-61 isoform X1 156 215 - -
Seca8g00330 237 CDD SNARE_Qc 156 209 - -
Seca8g00330 237 FunFam Syntaxin 10 3 104 - -
Seca8g00330 237 SUPERFAMILY SNARE fusion complex 151 209 - -
Seca8g00330 237 Gene3D - 155 212 - -
Seca8g00330 237 MobiDBLite consensus disorder prediction 97 119 - -
Seca8g00330 237 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Seca8g00330 237 Gene3D - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00330 Seca-Chr8 3853755 3857653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00330 55 236 SNARE and Associated Proteins AT1G28490 60.109 7.71e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00330 K08500 - gmx:100793612 361.688