Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00321 ATGCAAGATTTTCTCATCCTCACCAAGAGCAAAAAATATAGAATAGATATCTTTCTGGGGTACCAGATATTGTCTTTGGATTTCTCTCTTTTTTCTACAGTGTTTGATATAATGATTTCTGGTAGGTGTGCAGCTTGCAAGAGTCAGAGAAGAAGGTGCCCTTCAGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAGAATATATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAAATTAGTCCCTATTTACGTGAACAAGCTGCAAATTCTATGTATTTAGAAGCACAATGTAGGATTGAAGACCCTGTTTATGGGTGTGTTGGGATTATCTCTAAATTGCATCAACAAATCCACAATACAGAAGTTGAGCTAGCCAAAATCCAAACTCAAATTGCTTATCACAAGCTCATCCAAAATCCACAGGTTGAAGCTGAAGAATCAAACTTCAATGTCTTGCCAGCACAAAGTAGCAGCACGGGGCAGTTTCAATGGCCAAGTCAAGCTCCTTGGTTCAATTAA 552 0.3859 MQDFLILTKSKKYRIDIFLGYQILSLDFSLFSTVFDIMISGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHRIYGGSNVGKMLQQISPYLREQAANSMYLEAQCRIEDPVYGCVGIISKLHQQIHNTEVELAKIQTQIAYHKLIQNPQVEAEESNFNVLPAQSSSTGQFQWPSQAPWFN. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00321 183 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Seca8g00321 183 Coils Coil 121 141 - -
Seca8g00321 183 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Seca8g00321 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00321 Seca-Chr8 3775237 3775922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00321 38 143 AS2 family AT3G26660 63.208 3.08e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g00321 LOB 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00321 - - gmx:100790640 238.039