Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00313 ATGGAAGGTTCTTCCATTACCATTAACTTTCTTAAATCACAATGCAATGTGGATTCAAGGAAGAGCCTAAAAAGAAAACGTGAGGAACAAGGCAACAACAGCAATGTTGCAAATAACAACACCAACGTTATTAATGTTAATGATGTTATTCTTAACCAACCAGTTATTGGATTGCCAATGAGATTGCAAGAAAAGATTCAAGAAATGGAAGGCCGTGAGGTGAAGTTGGTGATCCAAAAAAAGCTCTTTAAGAGTGATCTGAGCTCTAATAATGGGAGGTTCTCCATCCCAATACAACAAATTCAACATGATGCAAGGGATTTCCTTACAGAGAGAGAGGAGCACTATTTGACAGTACGTGAAGGTGAAGGGAAAATCCAAAAGCTTGCTGGTATCTCAGTGTCTGTGTTGGATCCAAGTCTTAAACTTTACAACATGTGCTTCAAGAAATGGAAGATGGAACACACAGAGGTGTACAATATAACTAGTGGATGGAACGACCTTGTGAGAAATAATTCTTTGAAAGCCAATGATACAGTGCAATTGTGGTCTTTCAGAAGCAACAACAATCGCCTATGTTTTGCATTGGTCAAGATTTAG 600 0.3833 MEGSSITINFLKSQCNVDSRKSLKRKREEQGNNSNVANNNTNVINVNDVILNQPVIGLPMRLQEKIQEMEGREVKLVIQKKLFKSDLSSNNGRFSIPIQQIQHDARDFLTEREEHYLTVREGEGKIQKLAGISVSVLDPSLKLYNMCFKKWKMEHTEVYNITSGWNDLVRNNSLKANDTVQLWSFRSNNNRLCFALVKI. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00313 199 CDD B3_DNA 78 190 IPR003340 GO:0003677
Seca8g00313 199 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 20 199 IPR005508 GO:0003677
Seca8g00313 199 SUPERFAMILY DNA-binding pseudobarrel domain 77 192 IPR015300 -
Seca8g00313 199 Gene3D - 67 196 IPR015300 -
Seca8g00313 199 Pfam B3 domain-containing protein At2g31720-like 61 170 IPR005508 GO:0003677
Seca8g00313 199 ProSiteProfiles B3 DNA-binding domain profile. 149 199 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00313 Seca-Chr8 3711965 3712564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00313 51 196 B3 DNA Binding Superfamily AT1G05930 27.097 1.21e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00313 - - tpra:123920509 149.058