Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00299 ATGGATCTGGAGGTGGTTGGGAGGCACGCCATGCTGTTCGACGACGACGGCATGGCGGCGTTCGTGAACTCAGCGGAAGCTCTGGTAGAGTGGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCTGGTCCCCTTCCTCCTCGCCTCAAGCGCCGCCCTTTTCAACCTGAAGCTGACCTCGATTATGAACGTTATCTCGATCTCCCTTCATCATCTTCTTCTGACGAACAACCACAAGATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTGTAGCATTTTCATATGAAAATCCAAATGTGTCCACAGAGACAAAGGACAATGATACTGAGTCTGGTTTTCATCCTAGCTTTCCAGTACCAGAAAACTTACTCCATAACCTGCCTCCAAATGAGAAGGTGCATCAGATTATTTCAAGGACTGCAATGTTTGTCAGCAAACACGGAAGCCAGTCAGAAATTATTCTGAGGGTGAAACAAGGAGATAATCCAACTTTTGGCTTCCTTATGCCTGACCACCGTCTTCATGCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTCTGAATGATGGTGACTCAAATGTGGACAAGAATAAAAGTCAGGGACTTGATCAAACGGGTGGTGCATTGTCTTTGCTTGGATCTATCTATGGATCTGGAGAAGATGAAGATGGTACAACTGAGAATACTTGTGATTTAGATAGAAACAAATGTGAGGGAGCTGTTGATGCTGCTAATACTCATTCTTCTCCAGGAATAGAACAGGCTGAATCTTCTTCAGATGCATCCAAGAAGGATGGAAGCATTTCAAAAAATTCAATACCCTCTTTGAAAGAAAAAGTTCCTGTCATTAAGCGGAATCATTCTGTTAGTACTGTTAAGACAGCTACAGCAGCTAGGGCAAAATCCAGTGATGCCTTGGATTCAGTGTCGAATGCTGTGAATAAGTCACAGACTTCTGTGCCTAGTAATGCTAAGATTGAACTACCTGTTGTTGAACCACCATCTGACTTAAAGAGAGTTATTGAGAAGATAGTTGAGTTCATCATAAAAAATGGCAAACAATTTGAGGCTGTTCTTGCTGAACAGGATCGTGCTTATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTGAAAGTTCTTCAAACTGCTGAAGAGTCTAAGTTACCAGGCAAGGGCTACCAGAAGCACACTCCTGCGGGTCGTGCAGGGGACAATAATACTGCTGTACATGAAGAAAGTGACAATCTTTCATTTGGATCTATGGGTTCTGATCTACCAAATGATATGGACCGGAAAGAGAAATTCAAGATGATTATTGCCAAGTCAAAGAAGGATGGTCAAGATTCAACTCCCAAAGACAACCAATCTCAAAACACAGTTACCATGGATGCAGCGGCAGCAGCAGCTATTCTTCAGGCTGCCACTAGGGGTATTAAAAATCCTCAGTTAGAAATTTTTACCAAGACATCAAGTGGTAGTGGTCAAGGCCTTGGAAGTGATGGTGGGTATTTGTCCAGCTCTGGGAGTCTTTATTCATCTCAACTGCAGGGTTTGCTTGAAAATCCAAATCTGAATTCAGAGGCTAGCGCTTCTGTCCCTGTTGCCAAGGCTATTGCAGAAACTGTAGCTATTGCAGCAGCTGGTGAGGCAGACTCCTCTGAAGCACACATGACTAAAGAGCAGAAGCTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGATAAAAAGTGGAGCTGGAGCATTAAAAGGTGAACTGCCACGAGCTTTATCAGCTGAGCCACCAGGCTCTGGATTTTCAGGTTCAGATGCTGAGACTGGAAATCTTGTGGGTAAAGAAAGGGAAGGAAGCTCTGTTCCATTCGAAGTTGATAATTCAGATAAAAGTCAAAAGTCTGAGGAGAAGCCTTCGACTGATAATTCAGATAAAAGTAACGAGTCTGAGGAGAAACTTGGTGATAACAATGAAAGGCGATCGAAAAGAAGGTACCGTTCTAGATCTAGTAACCATGAAGAGGAGGAAGAAGAGGAGGAAGAAAATACTGAAGATAAAAGGGATCACAAACGATCCAGAAAAAAGCATCGATCTCATCAATCTTCACACAGCAGTCGGGACAGGTATAAGCACAAGAGAAAGCATTCCTCCTCCAAAGACAAGTATTCTTACAGGGGGACTAAGCATGACAGCTCCTCCGATGATGAGCTTCAACACTCGAGGCATCATCATAAATATGATAGCTCTTCTGATGAAAAGCATCGCCCTTCTCGACGAAGGCATAGAGAGAGTAGCGTATCAGATCATGAGCATAGACATTCTCGACGTTCACATAAACATTATAGCTCGTCTGATGATGAGCGCAGGCACCGAAGCAGAAATACAAAACATAAGAGCAGATCTCATGCTGAAAGAGAAACAGTCTTGGAGGAGGGGGAGATAGTTAAATCTGATAAGTCACAACTAAGTGAGGCTGGACGTGCTAGCAGGGAGGCTTCTGCCGCAAGGGCACCATCTCAATCTCCTGAAATAACTGATACTAGCTTAGATCTTCTTATAAAGAATACCGGTAGCAACAGAACAACAGAGGAAGATGCAGCATCTGAAACTATGGATGATAATAAGAGAACTGAGGTAGCTTTGGTAGCTGAATTGCACCAGATGAATGCTGAAAATCAACGTTTAAGAGAGTTGGTGGATGAGGTGAACAATAACTACAATGCCTTACACATGCAACTTATCAAGCTAATGCAGAAGCAGCAGGATAACCATAGGGTAATTTTTATTTTTAACTTATAG 2844 0.4307 MDLEVVGRHAMLFDDDGMAAFVNSAEALVEWNSLSIDRYDVRHLLSGPLPPRLKRRPFQPEADLDYERYLDLPSSSSSDEQPQDNDSGPVNSAGYRAVAFSYENPNVSTETKDNDTESGFHPSFPVPENLLHNLPPNEKVHQIISRTAMFVSKHGSQSEIILRVKQGDNPTFGFLMPDHRLHAYFRFLVDHQELLNDGDSNVDKNKSQGLDQTGGALSLLGSIYGSGEDEDGTTENTCDLDRNKCEGAVDAANTHSSPGIEQAESSSDASKKDGSISKNSIPSLKEKVPVIKRNHSVSTVKTATAARAKSSDALDSVSNAVNKSQTSVPSNAKIELPVVEPPSDLKRVIEKIVEFIIKNGKQFEAVLAEQDRAYGRFPFLLPSNRYHTYYLKVLQTAEESKLPGKGYQKHTPAGRAGDNNTAVHEESDNLSFGSMGSDLPNDMDRKEKFKMIIAKSKKDGQDSTPKDNQSQNTVTMDAAAAAAILQAATRGIKNPQLEIFTKTSSGSGQGLGSDGGYLSSSGSLYSSQLQGLLENPNLNSEASASVPVAKAIAETVAIAAAGEADSSEAHMTKEQKLKAERLKRAKMFAAMIKSGAGALKGELPRALSAEPPGSGFSGSDAETGNLVGKEREGSSVPFEVDNSDKSQKSEEKPSTDNSDKSNESEEKLGDNNERRSKRRYRSRSSNHEEEEEEEEENTEDKRDHKRSRKKHRSHQSSHSSRDRYKHKRKHSSSKDKYSYRGTKHDSSSDDELQHSRHHHKYDSSSDEKHRPSRRRHRESSVSDHEHRHSRRSHKHYSSSDDERRHRSRNTKHKSRSHAERETVLEEGEIVKSDKSQLSEAGRASREASAARAPSQSPEITDTSLDLLIKNTGSNRTTEEDAASETMDDNKRTEVALVAELHQMNAENQRLRELVDEVNNNYNALHMQLIKLMQKQQDNHRVIFIFNL. 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00299 947 SMART DRY_EERY_2 1 106 IPR019147 -
Seca8g00299 947 MobiDBLite consensus disorder prediction 222 241 - -
Seca8g00299 947 MobiDBLite consensus disorder prediction 814 840 - -
Seca8g00299 947 Pfam Surp module 347 395 IPR000061 GO:0003723|GO:0006396
Seca8g00299 947 Pfam Surp module 142 190 IPR000061 GO:0003723|GO:0006396
Seca8g00299 947 MobiDBLite consensus disorder prediction 71 92 - -
Seca8g00299 947 MobiDBLite consensus disorder prediction 250 280 - -
Seca8g00299 947 Pfam Alternative splicing regulator 2 103 IPR019147 -
Seca8g00299 947 Coils Coil 677 708 - -
Seca8g00299 947 MobiDBLite consensus disorder prediction 849 864 - -
Seca8g00299 947 Coils Coil 900 934 - -
Seca8g00299 947 SUPERFAMILY Surp module (SWAP domain) 327 395 IPR035967 GO:0003723|GO:0006396
Seca8g00299 947 Gene3D Surp module 334 402 IPR035967 GO:0003723|GO:0006396
Seca8g00299 947 ProSiteProfiles SURP motif repeat profile. 143 185 IPR000061 GO:0003723|GO:0006396
Seca8g00299 947 ProSiteProfiles SURP motif repeat profile. 348 390 IPR000061 GO:0003723|GO:0006396
Seca8g00299 947 SUPERFAMILY Surp module (SWAP domain) 120 190 IPR035967 GO:0003723|GO:0006396
Seca8g00299 947 MobiDBLite consensus disorder prediction 704 734 - -
Seca8g00299 947 FunFam Splicing factor, suppressor of white-apricot 332 404 - -
Seca8g00299 947 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 2 743 IPR040397 -
Seca8g00299 947 MobiDBLite consensus disorder prediction 255 280 - -
Seca8g00299 947 Gene3D Surp module 136 191 IPR035967 GO:0003723|GO:0006396
Seca8g00299 947 MobiDBLite consensus disorder prediction 605 864 - -
Seca8g00299 947 MobiDBLite consensus disorder prediction 402 441 - -
Seca8g00299 947 MobiDBLite consensus disorder prediction 735 786 - -
Seca8g00299 947 MobiDBLite consensus disorder prediction 71 90 - -
Seca8g00299 947 SMART surpneu2 141 194 IPR000061 GO:0003723|GO:0006396
Seca8g00299 947 SMART surpneu2 346 399 IPR000061 GO:0003723|GO:0006396
Seca8g00299 947 MobiDBLite consensus disorder prediction 634 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00299 Seca-Chr8 3520769 3530147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00299 860 936 WRKY Transcription Factor Family AT4G22070 41.250 5.29e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00299 - - gmx:100791165 1139.41