Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00298 ATGGTTGAGTTGATGGATTGCAAGGTGGATTGTGGAAGTAGGGAAAGTTCAAAAAGCAGAATGGATCAAGCATTATTTAACAAAGTTCCTAGATTGAGTTCTTTGGGGGACCAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAACTCCTATGATTGCAGATGGATGCCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGGAATCCTTGTCCACGGGCTTATTATCGTTGCACAATGAGTACTGGTTGTCCTGTACGGAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTGATCACTACATATGAAGGGCAGCATAACCATCCACTGCCTCCCACTGCACAAGCAATGGCATCCACCACATCTGCAGCTGCCTCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTAATTAATCCATCCATATTACAAACTGCTGCAATTCCCTGTTCACAAAACATGGCAACTCTATCTGCCTCAGCCCCATTTCCAACCATCACACTTGATCTCACTCAAACTGCTACCAATTCCTCACAGCTACAAAGGGAACCACAGGGCCAACTTAACCTCCTAGCTCCACTTTTGGCTCACAAGTTTATGTCAGCTCCAAAAGTTTTTGGACAATCCCTTTGTGATCAAACTAATAAGCTCTCTGCCTTCAATGAGTCTCAGGGTATAGACACAGCTTCATCATATGCTGACACATTAAATGCAGCTACGGCTGCTATAACTGCAGACCCAAATTTCACTGCAGCTCTTGTGGCTGCTATAACATCTATGATGGGAAGTTCACATCCAAACAACAATAATGGTAACAATAATTCATAA 870 0.431 MVELMDCKVDCGSRESSKSRMDQALFNKVPRLSSLGDQASETMSMIKKARVSVRARSETPMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILQTAAIPCSQNMATLSASAPFPTITLDLTQTATNSSQLQREPQGQLNLLAPLLAHKFMSAPKVFGQSLCDQTNKLSAFNESQGIDTASSYADTLNAATAAITADPNFTAALVAAITSMMGSSHPNNNNGNNNS. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00298 289 ProSiteProfiles WRKY domain profile. 57 123 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00298 289 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 287 IPR044810 GO:0003700
Seca8g00298 289 SUPERFAMILY WRKY DNA-binding domain 55 123 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00298 289 SMART WRKY_cls 62 122 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00298 289 Pfam WRKY DNA -binding domain 64 121 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00298 289 FunFam probable WRKY transcription factor 31 47 124 - -
Seca8g00298 289 Gene3D WRKY domain 47 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00298 Seca-Chr8 3518852 3520537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00298 27 287 WRKY Transcription Factor Family AT1G62300 55.477 1.34e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g00298 WRKY 7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00298 - - vum:124848283 407.527