Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00288 ATGGCGATGGATGTTAACGGATCCGGGTCGAGGACAATATTAAAAGAGCCTCGTTACCGTGGCGTGAGGAAGAGACCATGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGATTAAGAAAGCGAGGGTTTGGCTTGGAACCTTCGATTCTGCAGAGGAAGCTGCTAGAGCCTATGACGCCGCCGCACGCACCCTCCGTGGACCCAAAGCAAAGACCAATTTCCCTCTCTCACCTTTCTGCTATCACCACCAACACCCCACCGTTGATCCCTTCTTCTACGCCGCCGGTAACGGTTTCCAAGACCACCACCACCACATGAACAACCCACAGAGACCAACCTCTAGTGGCATGAGCAGCACGCCGCCGGTAACGGTTTCCAAGACCACCACCACCACTGGGCCCCGCCCTCCCTCCGCCGTCAACCCCTCTCCGCCGGCCGCCACTCGCCGGTATCCCAGGACACCGCCGGTTGTCCCTGAAGATTGCCACAGTGATTGCGATTCCTCTTCCTCCGTCGTAGACGACGGAGACGATAACATCGTTTCGTCGTCGTTTCGAACGCCGTTGCCGTTTGATCTAAACGCACCGCCGTTTGATGTTGGTGCTGACGTGGCCACCGGTGATGATGAACTTCGCTGCACTGCGCTATGTCTCTGA 657 0.5784 MAMDVNGSGSRTILKEPRYRGVRKRPWGRFAAEIRDPIKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSPFCYHHQHPTVDPFFYAAGNGFQDHHHHMNNPQRPTSSGMSSTPPVTVSKTTTTTGPRPPSAVNPSPPAATRRYPRTPPVVPEDCHSDCDSSSSVVDDGDDNIVSSSFRTPLPFDLNAPPFDVGADVATGDDELRCTALCL. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00288 218 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Seca8g00288 218 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Seca8g00288 218 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Seca8g00288 218 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Seca8g00288 218 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Seca8g00288 218 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca8g00288 218 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Seca8g00288 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 179 - -
Seca8g00288 218 FunFam Ethylene-responsive transcription factor 2 18 76 - -
Seca8g00288 218 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Seca8g00288 218 MobiDBLite consensus disorder prediction 102 181 - -
Seca8g00288 218 MobiDBLite consensus disorder prediction 137 152 - -
Seca8g00288 218 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00288 Seca-Chr8 3436796 3437511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00288 5 218 AP2-EREBP Transcription Factor Family AT1G50640 56.637 4.24e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g00288 AP2 6.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00288 K09286 - gmx:100803943 261.922