Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00282 ATGAGCTTAATTCCTCAACCAATGATTTCCCCTCTAATTTTTTTTATTTGCTACTCTTTGTGTTTTGGTAATGCCATGGATTGTGGCGGGAAACAAGTTGCAAAAACCATCACTGTTGATCAGCATGGCAAAGGAGATTTCAAGACAATTCAAGCTGCCATTGATTCTATAAAGAGCCAAAATGATCAATGGATTAAGATTCATATAAACTCTGGCACATACAAAGAAAAGGTTTCTATTCCTATAGAAAAACCATGCATCATTTTGGAAGGAGCTGGTAGGCAGAACACAATCATTACTTATGGTGATCACCAATCAATAGCAAATAGCGCTACATTCACTTCATCTCCACCTAATGTGGTTGTAAGTGGCATCACCTTTAAGAACTCGTTCAATTTGGCACGATGGTCGAAATTGTATAAATACAAAAATGGAATTGAACCAGCAGTGGCAGCTAGTGTATCTGGAGACAAATCTGCCTTCTTTAGTTGTAGTTTCATGGGTTATCAAGACACCTTGCTTGATTCAGAGGGACGCCATTATTTTAAAGGTTGCTACATACAAGGTGAAGTGGACTTTATTTTTGGTTCCGGTCAATCATATTATGAGAATTGCGCGATCAATGCCACACAAGGGAATTCTTTACCCTCGGGTTTTGTTACAGCCCAAGGTAGGAATTCATCAAATGACCCAAATGGTTTTGTTTTTTATGGAGGTTCCATTGATGGGAATGGTAAAGTGAATCTAGGAAGAGCATGGGGCCCTTACTCAAGAGTTATATTTCATAGAACAACTTTTTCTTCAGTGGTAACCTTAGAAGGATGGAATGCTTGGAGCTTCATAGGCCACGAGAGTAACTTCATCTATGCAGAAGTTAATTGTACAGGAGAAGGGAGCAATACTTCAAAGCGTCCCCCTTGGGTGAAGAAGGAATTGAGTCCATCAGAGCTAAATAAATATTCTTTATCATCTTTCATCAACAAAGATAATTGGATTGCCAACATACCAACGCTCTTCTTGTAA 1023 0.3871 MSLIPQPMISPLIFFICYSLCFGNAMDCGGKQVAKTITVDQHGKGDFKTIQAAIDSIKSQNDQWIKIHINSGTYKEKVSIPIEKPCIILEGAGRQNTIITYGDHQSIANSATFTSSPPNVVVSGITFKNSFNLARWSKLYKYKNGIEPAVAASVSGDKSAFFSCSFMGYQDTLLDSEGRHYFKGCYIQGEVDFIFGSGQSYYENCAINATQGNSLPSGFVTAQGRNSSNDPNGFVFYGGSIDGNGKVNLGRAWGPYSRVIFHRTTFSSVVTLEGWNAWSFIGHESNFIYAEVNCTGEGSNTSKRPPWVKKELSPSELNKYSLSSFINKDNWIANIPTLFL. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00282 340 SUPERFAMILY Pectin lyase-like 33 336 IPR011050 -
Seca8g00282 340 Gene3D - 30 338 IPR012334 -
Seca8g00282 340 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 333 - -
Seca8g00282 340 FunFam Pectinesterase 31 336 - -
Seca8g00282 340 Pfam Pectinesterase 37 328 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00282 Seca-Chr8 3386821 3388848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00282 13 284 Carbohydrate Esterase AT2G19150 48.551 1.20e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00282 - - var:108336510 399.823