Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00280 ATGAGGTTGCTTACTAGTACTCAACCAATGACTTTCCCTCTTATAATCGTTTTTATTATTGGTCACTCTTTCTTTCTTGGTAGAGCCACATATTGTGGTGGGAATCATGTTGCAGATACCATCATTGTTGATAAACTTGGCAATGGAGCATTCCAAACGATTCAAGCTGCCATTGATTCTTCTGTAAACACTTACAATGATCAATGGCTTAAGATTCACATAAATCCCGGCACATACGTGGAAAAAGTTATTATTCCTTTTGAAAGGCCATGCATGATTTTAGAAGGAGAAGATAGTGAGAGCACGATCATTACTTACGGTGATCACCAAGCAACAAACTCAAGCGCTACATTCATTTCATTTCCACCTAATGTGATTGTGAGTGACATTACCTTCAAGTGGTCGAGAATGCATATTAATAGGGCAGGTGAAATCAAACCAGCCGTGGCAGCAAGTATATATGGAGACAAATCTTACTTCTTTAATTGTAGCTTTAAGGGTTATCAAGACACTCTATTTGATGTATTAGGACGCCATTACTTTAAAGATTGCTACATTGAAGGCGAAGTGGACTTTATTTTTGGTGATGCCCAATCTTATTATGAGAATTGTTTGATCAACGCCACACAATTGGAAAATAAACCTTCAGGTTTTATCACAGCCCAAAATCGAAATTCAACAAAGGATCCAGGTGGTTTTGTTTTTGCTGGAGGTTCAGTTGTTGGGTTTGGTGAAGTGAATTTAGGAAGAGCATGGGGTCCTTATTCAAGAGTTATATTTCAAAATACATATCTTTCTGGAGTGGTAACCCCTCAAGGATGGAATGCTTGGGACTATGCAGGGTACGAAAATTTCATGTATGTAGAATTCAATTGCACGGGAGCTGGGAGTGATACCTCAATGCGTCCCCCTTGGGTGAAGACGGAGTTGAGTCAAAAAGAGCTAAATGAATATTCTTTATCATCTTTCATTAATCAAGATCATTGGCTCGACAAAATACCAACTATATGA 1011 0.3838 MRLLTSTQPMTFPLIIVFIIGHSFFLGRATYCGGNHVADTIIVDKLGNGAFQTIQAAIDSSVNTYNDQWLKIHINPGTYVEKVIIPFERPCMILEGEDSESTIITYGDHQATNSSATFISFPPNVIVSDITFKWSRMHINRAGEIKPAVAASIYGDKSYFFNCSFKGYQDTLFDVLGRHYFKDCYIEGEVDFIFGDAQSYYENCLINATQLENKPSGFITAQNRNSTKDPGGFVFAGGSVVGFGEVNLGRAWGPYSRVIFQNTYLSGVVTPQGWNAWDYAGYENFMYVEFNCTGAGSDTSMRPPWVKTELSQKELNEYSLSSFINQDHWLDKIPTI. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00280 336 FunFam Pectinesterase 35 334 - -
Seca8g00280 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 331 - -
Seca8g00280 336 Pfam Pectinesterase 41 326 IPR000070 GO:0030599|GO:0042545
Seca8g00280 336 SUPERFAMILY Pectin lyase-like 37 333 IPR011050 -
Seca8g00280 336 Gene3D - 34 335 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00280 Seca-Chr8 3368277 3370071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00280 17 283 Carbohydrate Esterase AT2G19150 45.387 3.15e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00280 - - gmx:100787453 360.918