Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00273 ATGGACGAGGTCCAAGAACCGGCGCCGGATCCTCAACCGGCGGTTGAGAACGGCGGAGCTGTGGAACTGGATGTTGACGAGCGGTGCAGTAAGAAGGCGAAGGTGGAGAGTGCATCAGAGGCTGAATTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCCACTATGGCGACGATGCGAGGGGGAAGGAAGCCTACCGATGTGGAGGTTGAACTTATGAGAGAGGCTCGAACCAAGCTTGCACACCTCTGTCAGGGGCTAGCTCCCAAGGATATTGTCGCCAAGGAAGCTATTGACACTGTCATCGAAGATCTTGGCTTGAACGCTAAGATTAAGGACCAGAGGTTAGGGTTTCGAGCTCCCAAGATGTCCATTGCCGAGAGGTATTCGCACTCTAAGTGGAAGATGGAGGAATCAAAGAAGTTTTCTGCACCTTCTACACCATATGCATCTCAGCCCTTGCAAACAAGTATAGCTGGAACAGTCGACAACCGTGTGCCAACACATGCTGTTCGAATGGTTGCGTCTGATAAACCAAGCCACGCAGCATTCTCTTCTACAGGAACTGTAGTGTCTATTCCTCCCCATGTTGCTGTAGAATCTTCTGTGGCATTGCAATATCAAACAACCAACAATGAAGTGAGATCACCTGTGGTTTCTGGTGTAATGCCTAGCAGTCACTTGGGGAGAAATTCAACTTCCTTAGCATTGCCTAAAGTTGATGGAGGATCAAATGGGTCTCCTTATGTGCTGCAAGTCCAAGCAAATTCATCAGCAAACCAGCCATTGGTGAATGCTCCAACATGGTCAATACAGACTCAACCTACATCATTAGCCAGAAGTGCATCAGAAAACAAGGTGCTTACTCTTAACTCAGCCAAGGTTGAAGTAGCAGCTGATGTAACCGTATCAAGGGCAGGGCCTCAAATAACAGCAGATCAGAGCTTTAGACCATTTATTACTCAAACAGCACCTGGAAATTTGTCTACTATGCACCAGCCATTGCAGGGCATGAACATGGTTCAACCTCCTTTGATTCCTAGTCATGCTGACATTGCAAAGATTGTCCAGAAATTGTTACTGCCAAAGCTTCCTGACCATCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAAATGTGTGAGCTCACTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCGGTCTTAAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTAAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATACGGTCGTGTCATGAGATCCTCAAACACACCACCAAAATTGCCCTCTAATACAGGTGGTATTCAGCCATCTTCAGAGAAGAAAGAAGGGAGCTTAGATCCAAAGGTCAGCCCTCAGATGTTAACAACAAATGGGAGCTCTCTTCCAACTGTTTCCAGTGGCAATCACAATGTTGAGCTGTCATCTGACTCAAAGACCCCAGATATGAAAGATGTACAAGGTACCAGCATTTCATCTAGCATTGAAATTATTGGTGAGAAGCCTGATCCAAACATCTGTATGAAATCCCTTAGTGCAGCTGCTAGTCCTTCCACTGGCTTGCCAGGTGAAAGTTCTTCTCAACAAATAAATTCTGAGGCTTCAATCTGTAAAGAGACTTCAGAACCTGAAACTCTTCCTAAATTATCTGAGCCGGCTAAATGTGAAAATTTACAATCACCACAAGATTTTCAAGTTGAACAGACAGTGTCACAAGACAATGCTGAAGTATCATCAGATAAACAAGTTAACGGTAGTTTTATGATTAGTAACCAAAATGAATCTCATGGAGGAGAAAATTTAACTTATGATATCAAGCAAGATGAATCATCAGATAAACAAGTTAACAGTAGTTTTATGATTAGTAACCAAAATGAATCTCATGGAGGAGAAAATTTAACTTATGATATCAAGCAAGATGACCTAGATGTTGCACAAGAAACTTTTGTTGGAGGTTCGGGAACTAATACTGAAGGTAGACAGCACTCTGCATTATCCTCAGATAGCTCACATGTTGTAGAATGGATTGGTGATGTTGTACAGCTTGTAGATGAGAAAAAGTTTTACCAATCTTGTTCTGTTGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCCCATCCACCCATGGCAAAGAAACACCTTCTAAACTTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAACGTTGGTCATCCTTGTATATCTGAAGTTAATGAGGTTTATGAGTCTAATAGTGATAGAATTGAAATGGCCAGCTCTATTCGAGGCCCATGTGAAGTCCTGCCATCTGATAAATTCAAACAAGAAAATGACAGGCGATGTCAGTTTGGAATTGAGGAAAGTGATTTTGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTTATTTCAACCTGTTACCAGTTGA 2565 0.4312 MDEVQEPAPDPQPAVENGGAVELDVDERCSKKAKVESASEAELKRVAEIVLVLSTMATMRGGRKPTDVEVELMREARTKLAHLCQGLAPKDIVAKEAIDTVIEDLGLNAKIKDQRLGFRAPKMSIAERYSHSKWKMEESKKFSAPSTPYASQPLQTSIAGTVDNRVPTHAVRMVASDKPSHAAFSSTGTVVSIPPHVAVESSVALQYQTTNNEVRSPVVSGVMPSSHLGRNSTSLALPKVDGGSNGSPYVLQVQANSSANQPLVNAPTWSIQTQPTSLARSASENKVLTLNSAKVEVAADVTVSRAGPQITADQSFRPFITQTAPGNLSTMHQPLQGMNMVQPPLIPSHADIAKIVQKLLLPKLPDHPTWTPPSRDYMNKALTCQMCELTVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGIQPSSEKKEGSLDPKVSPQMLTTNGSSLPTVSSGNHNVELSSDSKTPDMKDVQGTSISSSIEIIGEKPDPNICMKSLSAAASPSTGLPGESSSQQINSEASICKETSEPETLPKLSEPAKCENLQSPQDFQVEQTVSQDNAEVSSDKQVNGSFMISNQNESHGGENLTYDIKQDESSDKQVNSSFMISNQNESHGGENLTYDIKQDDLDVAQETFVGGSGTNTEGRQHSALSSDSSHVVEWIGDVVQLVDEKKFYQSCSVDGVTYRLQGHALFPSTHGKETPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNVGHPCISEVNEVYESNSDRIEMASSIRGPCEVLPSDKFKQENDRRCQFGIEESDFVQPIFLCRWFYDEIKKLFQPVTS. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00273 854 CDD BAH 725 853 - -
Seca8g00273 854 SUPERFAMILY FYVE/PHD zinc finger 374 439 IPR011011 -
Seca8g00273 854 ProSitePatterns Zinc finger PHD-type signature. 384 431 IPR019786 -
Seca8g00273 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 445 IPR013083 -
Seca8g00273 854 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g00273 854 SMART PHD_3 383 432 IPR001965 -
Seca8g00273 854 MobiDBLite consensus disorder prediction 596 630 - -
Seca8g00273 854 ProSiteProfiles BAH domain profile. 726 853 IPR001025 GO:0003682
Seca8g00273 854 MobiDBLite consensus disorder prediction 452 468 - -
Seca8g00273 854 MobiDBLite consensus disorder prediction 442 516 - -
Seca8g00273 854 Pfam PHD-finger 384 432 IPR019787 -
Seca8g00273 854 MobiDBLite consensus disorder prediction 479 516 - -
Seca8g00273 854 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 853 - -
Seca8g00273 854 MobiDBLite consensus disorder prediction 542 568 - -
Seca8g00273 854 Gene3D - 705 854 IPR043151 -
Seca8g00273 854 ProSiteProfiles Zinc finger PHD-type profile. 381 434 IPR019787 -
Seca8g00273 854 MobiDBLite consensus disorder prediction 596 629 - -
Seca8g00273 854 MobiDBLite consensus disorder prediction 542 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00273 Seca-Chr8 3297921 3305429 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g00273 PHD 2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00273 - - gmx:100807139 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00273 8 3297921 3305429 Seca8g00273 8 3297921 3305429 ECH