Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00271 ATGTCAGACCTAGACAGGCAAATAGAGCAGCTGAAGAGATGCGAGCCTCTCAAGGAGTCTGAAGTCAAGGCCCTTTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGTAATGTTCAAAGGGTCGACGCCCCTGTCACAATATGCGGGGATATCCATGGCCAGTTTTATGACATGAAAGAGCTTTTCAAAGTAGGAGGTGATTGCCCCAAAACAAACTATTTATTCCTTGGGGATTTTGTTGATAGAGGGTTTTATTCAGTTGAAACGTTTCTGCTACTGCTGGCTCTTAAGGTGAGGTATCCAGATCGGATTACACTCATTAGGGGAAACCACGAGAGCCGTCAGATCACACAGGTATATGGATTCTATGATGAGTGCCTTCGGAAATATGGTTCAGTCAATGTATGGAGATATTGTACTGACATATTCGATTACTTAAGGTTAGCGAATTTCTGGAAGATCTCAAAATTTTGCAGATACATATGTGTTTCTGTGGGCTTTCCTATGTTGACAACTACAAACTGCAGCTTGTCCGCCCTAATTGAAAACAGGATTTTCAGTGTTCATGGTGGTCTTTCTCCTGCCATTTCAACCTTAGACCAGATACGAACCATTGATCGGAAGCAAGAGGTACCTCATGATGGGGCCATGTGTGACCTCCTATGGTCAGATCCTGAAGATATTGTGGATGGATGGGGCCTGAGTCCCCGTGGTGCTGGTTTCTTATTTGGTGGTAGTGTTGTTACTTCTTTTAACCACTCCAATAACATTGACTATATATGCCGGGCTCATCAGTTGGTAATGGAAGGATATAAATGGATGTTCAATAACCAGATAGTTACTGTATGGTCAGCTCCAAATTATTGCTACAGATGTGGTAATGTAGCTGCAATTCTGGAGTTAGATGGAAATCTTAATAAGCAGTTCCGCGTGTTTGATGCTGCTCCACAGGAATCAAGAGGGGCACCTGCCAAGAAACCAGCGCCAGATTACTTCCTGTAA 1005 0.4368 MSDLDRQIEQLKRCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLRLANFWKISKFCRYICVSVGFPMLTTTNCSLSALIENRIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDGNLNKQFRVFDAAPQESRGAPAKKPAPDYFL. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00271 334 SUPERFAMILY Metallo-dependent phosphatases 2 320 IPR029052 -
Seca8g00271 334 Gene3D - 1 327 IPR029052 -
Seca8g00271 334 CDD MPP_PP2A_PP4_PP6 3 317 - -
Seca8g00271 334 SMART pp2a_7 17 317 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 142 168 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 200 227 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 257 277 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 279 295 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 74 101 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 107 131 IPR006186 GO:0016787
Seca8g00271 334 PRINTS Serine/threonine phosphatase family signature 45 72 IPR006186 GO:0016787
Seca8g00271 334 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 334 IPR047129 GO:0004722
Seca8g00271 334 Pfam Calcineurin-like phosphoesterase 45 266 IPR004843 GO:0016787
Seca8g00271 334 ProSitePatterns Serine/threonine specific protein phosphatases signature. 108 113 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00271 Seca-Chr8 3264996 3269800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00271 24 252 Calmodulin-binding Proteins AT5G63870 33.579 3.61e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00271 K15423 - cit:102608319 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00271 8 3264996 3269800 Seca8g00271 8 3264996 3269800 ECH