Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00270 ATGGCTTCTTCTTCAGACTCATGGGTGAAGGAATACAATGAAGCACTGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAGCGGAATTCATTTCCTGCTTCTGGACCTGAAACCCAGCGTCATTCATCTGCTATAAGAAGAAAGATTACAATATTAGGGACCAGGCTTGATAGCTTGGAATCCCTTTTGTCAAAGCTTCCTGGAAAGCAACCTGTATCTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGCGAATTTGAGATCAAAAGTTAACCAAATGGCTTCCTCGTTGAACATGTCAAATTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAACCAGATGCAATGAGTAGAACCGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAACGGCAAATTATGAAAGAACAAGACGAGGGCCTTGAGAAATTGGAGGAGACTGTAACAAGCACAAAGCATATTGCATTGGCAGTGAATGAAGAGCTGAGTCTACACACTAGACTCATTGATGACTTGGACCAACATGTAGATGTCACAGATTCTCGGCTCAGGCGAGTGCAGAAGAACTTGGCAGTTTTAAATAAACGAACGAGGGGTGGTTGTTCTTGCATGTGCATGCTTTTATCAGTGATCGGTATAGTGGTTTTGGCTGTTGTCGTTTTTCTGTTGGTCAAATATTTGTAA 699 0.422 MASSSDSWVKEYNEALKLADDISGMISERNSFPASGPETQRHSSAIRRKITILGTRLDSLESLLSKLPGKQPVSEKEMNRRKDMLANLRSKVNQMASSLNMSNFANRDSLFGPEIKPDAMSRTVGLDNNGLVGLQRQIMKEQDEGLEKLEETVTSTKHIALAVNEELSLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTRGGCSCMCMLLSVIGIVVLAVVVFLLVKYL. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00270 232 CDD SNARE_Qc 139 196 - -
Seca8g00270 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Seca8g00270 232 Gene3D - 138 200 - -
Seca8g00270 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Seca8g00270 232 SMART tSNARE_6 131 198 IPR000727 -
Seca8g00270 232 SUPERFAMILY t-snare proteins 27 100 IPR010989 GO:0016020|GO:0016192
Seca8g00270 232 PANTHER SYNTAXIN 35 219 IPR045242 -
Seca8g00270 232 FunFam syntaxin-51 isoform X2 138 200 - -
Seca8g00270 232 Pfam SNARE domain 173 224 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00270 Seca-Chr8 3257663 3260599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00270 1 232 SNARE and Associated Proteins AT1G79590 74.678 2.22e-127 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00270 K08503 - gmx:100782666 387.497