Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00252 ATGGCTTTGACTTCATCATTAACAACAACTAAACAGGTTGGTGGTCGAAGGTTGCTTCTTTCAGATGGCTTCCCTGATTGGCTATCTTCTTCAGATAGAAAGTTTTTTCAAACAACACCAAAAGCTGATATTTTGGTGGCTCAAGATGGCACTGGGAATTATAAGATAATATCAGAAGGTGTGGTTGCAACTACTAAGCTTAGTGAAAAATGGGGAGTTGTTATTCACGTCAAAGCAGATGTTTATAAAAAAAGTGTTGACATTAAGAGGTCAATGAAGAACTTGATGATCATTGGAGATGGGATGGGTTCCACTATTGTTACTGGTAATAATAACGCATAA 342 0.3713 MALTSSLTTTKQVGGRRLLLSDGFPDWLSSSDRKFFQTTPKADILVAQDGTGNYKIISEGVVATTKLSEKWGVVIHVKADVYKKSVDIKRSMKNLMIIGDGMGSTIVTGNNNA. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00252 113 SUPERFAMILY Pectin lyase-like 38 112 IPR011050 -
Seca8g00252 113 Gene3D - 37 113 IPR012334 -
Seca8g00252 113 Pfam Pectinesterase 43 112 IPR000070 GO:0030599|GO:0042545
Seca8g00252 113 PANTHER PECTINESTERASE 18 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00252 Seca-Chr8 3103338 3103679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00252 16 112 Carbohydrate Esterase AT1G23200 52.427 2.65e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00252 - - gmx:100816802 160.999