Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00251 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACTGATGAGGAACGTCTCAAAGAATATTTTGGGAAATATGGTGAGGTGATAGAGGCTGTGATCATGAGAGATCGAACCACAGGTCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTCATTGTGGAAAAACACATAATTGATGGCCGCACAGTTGAAGCTAAGAAGGCTGTTCCTAGGGATGATCAGCAGACTTTAAACAAACAGTCTGGTGGTGTCCATGGATCTCCTGGTCCTGGAAGAACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGAACAATTACTGATGTTGTTGTAATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACTTTTGATTCAGAAGAAGCTGTGGACAGAGTTCTTTTTAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCCAACCGGAGTCCATTGATAGGATATAACTATGGTTTGAATAGGGCTAGTAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATGAATCCAATTGGAGGCTTTGGAGTTAGGATGGATGGTAGGTTTAGTCCACTTACCAACAATAGAAGTGGCTTTACCCCATTTGGCTCTAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAATCCAAGCTATGGAGGGAGTTCCAATTATGGGAGTAGTTTAGGATATGGTCGGATTAGTCCTTTCTATAACAGCAACTCAAGCAGATATACCACTCCTATTGGCTATAGTGGGGGCAATGGGAGAAATGATTCTCTTATGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATAATACTTCCAATAACCCTGTTAGCCCTGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGCACTGCCACAAATTGGGGTCCATCAGTTCCAACCCAAGGTGGAGGAGCTGCTTCTGGCTATACTACTTGGAATAATGTTTATGAAGGTGGAGATCATAGCAGCATTGGATTAGGAGGAGGGGGAGGGTATGGTAGGAACAACAACACAAGTGTGACTCAATCCTCAACATTTACTGCACCAACCGATGGTTATGAAGGACCCTATGGTGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAGCTTGGCGATCTGCTGCTTCTGAGATAGATGGTTCAGGTTCATTTGGTTATGGACTTGGTGGTATAGCTTCAGATGATGCAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAAACTAATAGAGGAATTGCTGCCTAG 1446 0.4281 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSVAERVIVEKHIIDGRTVEAKKAVPRDDQQTLNKQSGGVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPNRSPLIGYNYGLNRASSYLNSYAQGFNMNPIGGFGVRMDGRFSPLTNNRSGFTPFGSNGYGMGVNLDSGLNPSYGGSSNYGSSLGYGRISPFYNSNSSRYTTPIGYSGGNGRNDSLMNSTSRNVWGNGGLNNTSNNPVSPGAYLGSGSGAFGVSIGNSGTATNWGPSVPTQGGGAASGYTTWNNVYEGGDHSSIGLGGGGGYGRNNNTSVTQSSTFTAPTDGYEGPYGDLYRSGSVYSDSAWRSAASEIDGSGSFGYGLGGIASDDAVKSSEGFIGNYNVTSRQTNRGIAA. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00251 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca8g00251 481 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Seca8g00251 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Seca8g00251 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Seca8g00251 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Seca8g00251 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Seca8g00251 481 MobiDBLite consensus disorder prediction 80 105 - -
Seca8g00251 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca8g00251 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 164 IPR000504 GO:0003723
Seca8g00251 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Seca8g00251 481 CDD RRM2_Hrp1p 107 184 - -
Seca8g00251 481 Gene3D - 6 88 IPR012677 -
Seca8g00251 481 Gene3D - 103 189 IPR012677 -
Seca8g00251 481 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Seca8g00251 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Seca8g00251 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00251 Seca-Chr8 3092670 3096578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00251 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 31.122 2.04e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00251 K14411 - gmx:100788515 815.453