Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00250 ATGCAGGACACAAGAGATTTTGCATTGATTCTAAGGAGTCTGGTTTGTTTTTCTGTCCTTGCTTTCTTTACCAAACTCTGTACAGGAGGTGAGTTATCAGAGTCTGAGCCTTTCTTCAATTTCCTAAAAGCTGTTGATCCCAATAATGTGCTTAACATTACTTGGATTGGTTCAACATCACATCCCTGCTTGGTCAAGTTGAATGGTGTAAGATGTAACTCAAATGCTACCAATGTTGTAGGAATAAGGCTTGAAAAATTGAACCTTAGTGGCATAATTGATGCAGATTCCTTATGCAGGCTCCAAAAGCTAAGAGTGGTGAGTTTAGCTAAGAATAACATCAGAGGAACTATTCCACACTCAATTTTGCATTGTACAAGGTTGGTGCATTTGAATCTAACTAACAATCAATTGAGTGGGGGGTTACCAAAGTCTCTAACAAAATTGAAATATCTTAAGAACTTGGACATATCTAACAACAATTTTTCTGGTATGATCCCTAGTAAACAAGAATATAGGCATCTCTTAACTTATTATGTGACTCCAATTAAGTTAGAAAGCAATAGTACTAGAAAGTGGCAAGAGGAGAGTGATACAAATTCAACACAATCAACACCAGATTCTTCAAGCAACAATACATCTGGTCATGACAAGAAACCATGGTATCTCAAAGGTGAAGTCTTGGTGGGGATAACTTTGGGAATTGGATTGCTTTTGTCATCAATTTACTTTGTGATGAAGAGGTCACCTAAGTTAATTGAAGAGATGCAAGTAGGGAAAAGCCAACGTGTGTCTCCCCTAAACAAGTCTACAAGTGAGGTTCAAGAGGAGAAACTAAAAGGAGATTCAGAACTTGTGTTATTTGTTGAACATCATGAAAGATTCACATTAGAGGACCTACTTAGAGCAAAAGCTGATTTGCAAAGTGAAAGCTTTTGTAGCAGCCTTTATAAGGTGACACTTGAGAATAGTGTTCACTATGCTGTCAAAAGATTAAAGAATGTGCAGGTATCCTCTGATGAATTTGGTGAAACATTGAAGCAGATAAGTGACTTGAAACATCCAAATATCCTTCCCCTTGTTGGTTACCGTTCTACCACTGAAGAAAAACTCATCATCTACAAATATCAAAGCAATGGAAGTCTGCTTAATCTTTTAAATGATTATATAGCAGGTAGAAAAGATTTCCCATGGAAAGTGCGCCTGAATATAGTATGTGGGATTGCAAGGGGTTTGGCCTTCATATATAGGAAATTGGATGGAAGAGAGGTAATTCCTCATGGAAATCTTAAGCTATCAAATATCCTTCTTAATGACAAGAATGAACCATTAATAAGTGAGCATGGTTTATCAAAATTCTTAGATTCAAACAGAGGTTTCCTCTTTTCCTCTCAAGGATACACAGCTCCTGAAAAGAGTTTAACAGAAAAGGGTGATGTATATAGCTTTGGAGTGATTCTCCTAGAATTACTAACAGGAAAAAGCATAGAAGTAAGTAGAATAGACCTTGCTAGATGGGTCAGGTCCATGGTGAGGGAGGAATGGACAGGAGAGGTGTTTGACAAAGAGGTTAGGGAAAATGAACATCAATGGGCATTTCCTTTGCTGAATATAGCCCTCAAGTGTGTGTCACGTTTCCAAGAAAACAGACCAACTACTGGTGAGATTTTGGAGACAATAGAAGAGGTAATGGATCAACATGAACAACAGCAGGAACATTCTGCTTCAAAATGTTGTCCTAATGGATCCAACCAAGAATGTTGTTCACTTCACAAAATCATACCTGATACATGGGATTCTCCAGGATCAAATTATTGA 1818 0.3757 MQDTRDFALILRSLVCFSVLAFFTKLCTGGELSESEPFFNFLKAVDPNNVLNITWIGSTSHPCLVKLNGVRCNSNATNVVGIRLEKLNLSGIIDADSLCRLQKLRVVSLAKNNIRGTIPHSILHCTRLVHLNLTNNQLSGGLPKSLTKLKYLKNLDISNNNFSGMIPSKQEYRHLLTYYVTPIKLESNSTRKWQEESDTNSTQSTPDSSSNNTSGHDKKPWYLKGEVLVGITLGIGLLLSSIYFVMKRSPKLIEEMQVGKSQRVSPLNKSTSEVQEEKLKGDSELVLFVEHHERFTLEDLLRAKADLQSESFCSSLYKVTLENSVHYAVKRLKNVQVSSDEFGETLKQISDLKHPNILPLVGYRSTTEEKLIIYKYQSNGSLLNLLNDYIAGRKDFPWKVRLNIVCGIARGLAFIYRKLDGREVIPHGNLKLSNILLNDKNEPLISEHGLSKFLDSNRGFLFSSQGYTAPEKSLTEKGDVYSFGVILLELLTGKSIEVSRIDLARWVRSMVREEWTGEVFDKEVRENEHQWAFPLLNIALKCVSRFQENRPTTGEILETIEEVMDQHEQQQEHSASKCCPNGSNQECCSLHKIIPDTWDSPGSNY. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00250 605 ProSiteProfiles Protein kinase domain profile. 301 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00250 605 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Seca8g00250 605 PANTHER OS05G0588300 PROTEIN 12 569 - -
Seca8g00250 605 Gene3D Phosphorylase Kinase; domain 1 267 376 - -
Seca8g00250 605 MobiDBLite consensus disorder prediction 190 217 - -
Seca8g00250 605 SUPERFAMILY Protein kinase-like (PK-like) 314 560 IPR011009 -
Seca8g00250 605 SMART serkin_6 301 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00250 605 Gene3D Ribonuclease Inhibitor 35 214 IPR032675 -
Seca8g00250 605 Gene3D Transferase(Phosphotransferase) domain 1 378 586 - -
Seca8g00250 605 SUPERFAMILY L domain-like 59 169 - -
Seca8g00250 605 Pfam Protein tyrosine and serine/threonine kinase 321 559 IPR001245 GO:0004672|GO:0006468
Seca8g00250 605 FunFam Leucine-rich repeat receptor protein kinase EMS1 75 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00250 Seca-Chr8 3080788 3083379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00250 11 563 Receptor kinase-like Gene Family AT5G53320 31.333 5.59e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g00250 PK_Tyr_Ser-Thr 8.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00250 - - gmx:100807491 905.205