Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00249 ATGATGCCGAGTGTTAACCCTGACCCATCTGACAAAGATTCTGAGCCATTTGTTGAAACCGATCCAACTGGTAGATATGGTAGATACAGTGAGTTACTTGGAAGTGGTGCTGTGAAAAAAGTGTACCGTGCATTTGATCAAGAAGAAGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTTAGGAACTTCTCTGATGATCCTGCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTACTCAGAAGCTTAACCAACAAAAACATCATTGCCCTTTACAGTGTGTGGAAGGATGAGCAACATGACACACTCAATTCCATCACTGAGGTATGTACCAGTGGGAATTTGAGGGAGTACAGGAAAAAACACAAGCATGTTTCCATCAAGGCCTTGAAGAAGTGGTCTAAGCAGATTTTGAAAGGGTTGAATTATTTGCATACTCATGATCCTTGTATCATCCATAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATATTGGCCAGCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTTGGCAAGAACCATTGTGCACACTCCATTCTTGGTACACCAGAATTTATGGCTCCAGAGTTATATGATGAAGACTACACAGAATTGGTGGACATATACTCATTTGGGATGTGTGTGTTAGAGATGGTGACACTGGAGATTCCATATAGTGAGTGTGACAATGTTGCAAAGATATACAAAAAGGTGTCTTCAGGGGTGAGACCTGCAGCATTGAACAAGGTTAAAGATCCTGAGGTCAAGGCCTTCATTGAGAAGTGTCTTGCTCAGCCAAGGGCAAGACCTTCTGCTGCTGAGCTTCTCAAAGATCCTTTCTTTGATGAGATTACTGATGATGACGAAAATGATGACTCTGCTGGTTCTTGCTAG 909 0.4268 MMPSVNPDPSDKDSEPFVETDPTGRYGRYSELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMVDRLYSEVRLLRSLTNKNIIALYSVWKDEQHDTLNSITEVCTSGNLREYRKKHKHVSIKALKKWSKQILKGLNYLHTHDPCIIHRDLNCSNVFVNGNIGQQVKIGDLGLAAIVGKNHCAHSILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAAELLKDPFFDEITDDDENDDSAGSC. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00249 302 ProSiteProfiles Protein kinase domain profile. 27 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00249 302 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g00249 302 SUPERFAMILY Protein kinase-like (PK-like) 22 287 IPR011009 -
Seca8g00249 302 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Seca8g00249 302 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Seca8g00249 302 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 290 - -
Seca8g00249 302 PIRSF TyrPK_CSF1-R 82 290 - -
Seca8g00249 302 PIRSF TyrPK_CSF1-R 28 133 - -
Seca8g00249 302 FunFam probable serine/threonine-protein kinase WNK9 110 292 - -
Seca8g00249 302 CDD STKc_WNK 25 286 - -
Seca8g00249 302 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Seca8g00249 302 Pfam Protein kinase domain 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00249 Seca-Chr8 3076301 3078790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00249 6 289 MAP Kinase Kinase Kinase AT5G55560 83.803 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca8g00249 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00249 K08867 - gmx:100786910 552.362