Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00246 ATGGACGCTGCTGCTACCAACTCCGGCGAACCCCACTCGAGTTCGGAGCTCCGGGTAGATGGGGCACATGATGATCCAAATCGAACAGGGTCGGGTCAAAATTCAACAGCAAGGTACAAGCTTTTGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTGAGTCCGACGTCGTTTTTGGAGTCCCCAGTTCTACTTTCCAACATGAAGTTGATTCAGAAATTGTTGCACATTGAGCATTGTAGTTTAAATATTATTTGTTTCCATTCTTTGCAGGTGGAGCCTTCACCCACTACAGGGTCCCTTCCTAAGCCTCACCAAACAGTTCATGGTTCTATGGCTTCTACTGCATCCGCTACATTTCCCATAACCAGTGCATGTTTTAATACCAATACTGTTGATGACAGAAGATCAAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGCTCCTGCAGACTTCAACAACCATGTAAGTCAACAATCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCCTCTTCACCATTAGTTGAAAGTGATATTTCTGTTCCATCTAATGAATTGAGCCTATCATCACCTGTTCAAATGGTTAGTTCTGGGGCTACTGCTCCTCTTGATGTCGATTTGGATGAAATTAACCACAAAGGCAACACAACTACTGGGCTTCAAACATCACATGCTGAAGTTAGATGCAGTGGACTTTCGGTTGCAACCGATAAATCATCTAATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGCTACTACAAATGCACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAGCGCTCTCATGATGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAGCCGAAACTCTGCTGGTACAATTATGTCTATGCAAGGAGAGAGATCTTTGGCTGGCCGAGATGAGAAAGCATCCAATATGTATAATCAGTCGTCTCATGCTGCTGAGCCCAACAGTACTCCAGAGCTATCGCCTGTAACAACAAATGATGATAGTTTAGAGGGTTCCGCATTTGTGACAAACAGGACAAATGACGAGGTTGATGATGAAAATCCTTTCTCAAAGAGAAGAAGAATGGAACTTGGAAATGCTGAAATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTGTGAGTGAAGTTGATATATTGGATGATGGGTACCGCTGGCGTAAATATGGACAGAAGGTGGTGAGGGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATACTGGTTGCCCTGTAAGGAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCAGTAATAACCACATATGAGGGTAAACACAATCATGATGTACCTGCTGCAAGGAGTAGCAGCCATGACATGGCAGGACCTGCAGCAGCAGCAGGAGGAGGGCAGACAAGAATTAAGTTTGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGATAGTAGTAGATCAAATGGGCAAGGGAAAATGCTTCTCTCTGAATTTGGGGACAGTCAAACTCACACTACTAGCAATTCCAATTTCAAGTTTGTTCATACTACCCCAGCTCAGGTATACTATGGTGTTCTAAATAACAGCACAAATCAATATGGTTCTAGAGAAAATAGGAGTGATGGTCCACCTTTAAACCATTCCTCCTATCCTTGCTCACAGAACATGGGAAGAATACTAATGGGTCCATGA 1830 0.4366 MDAAATNSGEPHSSSELRVDGAHDDPNRTGSGQNSTARYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKLIQKLLHIEHCSLNIICFHSLQVEPSPTTGSLPKPHQTVHGSMASTASATFPITSACFNTNTVDDRRSSFFEFKPHSRSNMAPADFNNHVSQQSTQVEGPGKAQSFASSPLVESDISVPSNELSLSSPVQMVSSGATAPLDVDLDEINHKGNTTTGLQTSHAEVRCSGLSVATDKSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSSRNSAGTIMSMQGERSLAGRDEKASNMYNQSSHAAEPNSTPELSPVTTNDDSLEGSAFVTNRTNDEVDDENPFSKRRRMELGNAEIIPVVKPIREPRVVVQTVSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGPAAAAGGGQTRIKFEESDTISLDLGMGISSAADSSRSNGQGKMLLSEFGDSQTHTTSNSNFKFVHTTPAQVYYGVLNNSTNQYGSRENRSDGPPLNHSSYPCSQNMGRILMGP. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00246 609 MobiDBLite consensus disorder prediction 344 388 - -
Seca8g00246 609 MobiDBLite consensus disorder prediction 484 505 - -
Seca8g00246 609 MobiDBLite consensus disorder prediction 344 378 - -
Seca8g00246 609 MobiDBLite consensus disorder prediction 304 323 - -
Seca8g00246 609 FunFam WRKY transcription factor 33 412 478 - -
Seca8g00246 609 ProSiteProfiles WRKY domain profile. 420 485 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 MobiDBLite consensus disorder prediction 576 600 - -
Seca8g00246 609 Gene3D WRKY domain 244 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 Gene3D WRKY domain 410 486 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 SMART WRKY_cls 425 484 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 SMART WRKY_cls 254 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 158 525 IPR044810 GO:0003700
Seca8g00246 609 Pfam WRKY DNA -binding domain 426 482 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 Pfam WRKY DNA -binding domain 255 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 MobiDBLite consensus disorder prediction 1 38 - -
Seca8g00246 609 FunFam WRKY transcription factor 244 314 - -
Seca8g00246 609 SUPERFAMILY WRKY DNA-binding domain 417 485 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 ProSiteProfiles WRKY domain profile. 249 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00246 609 SUPERFAMILY WRKY DNA-binding domain 251 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00246 Seca-Chr8 3035833 3041306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00246 42 609 WRKY Transcription Factor Family AT4G26640 54.202 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g00246 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00246 - - gmx:100816583 975.311