Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00244 ATGCCAATGTCTCTGAAACATAAAATGTCATACGGCTCCAGTAGGTTCAGCATTGAGCCTGTGCAAAATCTGGAGCCATGTTGCTTCCTGTCAGCTGAGAACCTAGAAAACTACTCATCCTCTGATAACAGTAGCCATGCAACCTATCCTTCAGTTCATCCTTTAAAACAATATTGCACCCTTGAATCTTCTACAAATAACAGTTTCCCTTGTCAAAATTCTCCATCAACTGTCAGTTTCTCACCAAACAATAGCCCAGTCTCAAAGCTACAGTCAAAATCTTATGTATTGAAGTCACAGCATTCTGTTGAAATTATTAATGATTCACTGGAGAATGAATCTTGTTTGACACATAATCATGATGACCTGAAGCACAAGATAAGAGAGCTTGAAAGTGCTATGCTGGGGCATGATGCAGATGTTATGGACATATATGATAGTGTAATTCCAGAAGAATCTGATTCACTTTTGTTAGAGGCAGAGAAGTGGAAGAAAATGATGGAGGTGATATCTAGAGGGGATTTGAAAGAAATGCTTTGCACTTGTGCCAAAGCATTGTCAGTGAATGATTTGGAGACAACTGAATGGTTGATGTCTGAGTTGCAAAAAATGGTGTCTGTTTCAGGCAACCCAATCCAAAGGTTAGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAGGCCTTGAAATGCAAAGAGCCTACTGGTAATGAACTCCTTTCTTACATGCATGTACTTTATGAAATCTGTCCATATCTCAAATTTGGGTACATGTCAGCAAATGGGGTAATAGCTGAAGCCATGAAGGATGAAAGTGAAGTACACATAATTGATTTTCAGATTAACCAGGGAATCCAGTGGGTAAGCCTAATCCAAGCTCTTGCTGGAAGACCTGGAGGACCCCCAAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCTAGGGGAGGGGGGCTTGATATAGTTGGAGAAAGATTGTCAAGGCTTGCACAGTCATATAATGTTCCCTTTGAGTTCCATGCTATTGGAACTTCTCCTACTGAGGTACAATTTGAAGACCTTGAACTTCAACCTGGTGAAGCTATTGCTGTGAATTTTGCTATGATGCTGCACCATGTACCAGATGAAAGTGTGGATAGTCAGAATCATCGTGACCGGTTGTTGGGAATGACAAAGTGCTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAATGACCTCCAATTCTTCCCTCGTTTCATTGAGACAATGAACTACTACTTGGCAGTTTTTGAATCAATTGATGTTGCTCTTCCAAGGGAACACAAAGAAAGGATTAATGTAGAACAGCATTGTTTGGCTAGAGAAGTTGTCAACTTAGTGGCGTGTGAAGGAGCAGAAAGAGTGGAACGTCATGAGCTTCTGAAGAAGTGGAGATCACGTTTCACAATGGCTGGATTCACACCATATCCATTGAGCTCCTTTATTAATTGTTCAATAAAAAATCTTCAGGAAAACTACCAAGGACATTACACTGTAGAAGAGAAAGATGGTGCTCTATGTCTTGGTTGGATGAATCAAGTCCTTGTTACCTCTTGTGCTTGGAGGTGA 1638 0.409 MPMSLKHKMSYGSSRFSIEPVQNLEPCCFLSAENLENYSSSDNSSHATYPSVHPLKQYCTLESSTNNSFPCQNSPSTVSFSPNNSPVSKLQSKSYVLKSQHSVEIINDSLENESCLTHNHDDLKHKIRELESAMLGHDADVMDIYDSVIPEESDSLLLEAEKWKKMMEVISRGDLKEMLCTCAKALSVNDLETTEWLMSELQKMVSVSGNPIQRLGAYMLEALVARMASSGSTIYKALKCKEPTGNELLSYMHVLYEICPYLKFGYMSANGVIAEAMKDESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGFDDSTSAYARGGGLDIVGERLSRLAQSYNVPFEFHAIGTSPTEVQFEDLELQPGEAIAVNFAMMLHHVPDESVDSQNHRDRLLGMTKCLSPKVVTLVEQESNTNDLQFFPRFIETMNYYLAVFESIDVALPREHKERINVEQHCLAREVVNLVACEGAERVERHELLKKWRSRFTMAGFTPYPLSSFINCSIKNLQENYQGHYTVEEKDGALCLGWMNQVLVTSCAWR. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00244 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Seca8g00244 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 539 IPR005202 -
Seca8g00244 545 Pfam GRAS domain family 176 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00244 Seca-Chr8 3029625 3031262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00244 114 545 GRAS Transcription Factor Family AT5G48150 65.525 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca8g00244 GRAS 7.6e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00244 - - gmx:100817120 942.569