Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00240 ATGGTCATAATGTGGCAGTATTTATGTAGTAGGGCTGGTATGAGGGACAAAAAGCATTTGATTAGTCTAGATCGGAAAAAGGAACACAGACCTCTTACCTGTACCAATTGTCAAGCTAGGTTGAGAGTTAGGTTTGATTATAAGACGGGTAAATGGAAGGTTGTTTCATTTGAAGAATCTCACAACCATGATTTAACCCCTGCAAAGTTTGTACCTCTAATTGGTACATATCGGGGATTGACTGATGGGGACAAAGCCCAAGTGGATGCATTGCATGCTCATGGCATTAGACCTTTCCAGATTATGGGTTTTCTTGTTGATAAAAAAGGAGGGTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTACAACTACATAGATGAGGTTAAGCGTGGTAAGATAAAAGATGGGGATGTTGTTGCTGGCTTAAGTTATTTGCAAGGAAAGGCAGATAATAATCCAATGTTTTTTTTCAAGATTTTTATGTTCTGA 492 0.376 MVIMWQYLCSRAGMRDKKHLISLDRKKEHRPLTCTNCQARLRVRFDYKTGKWKVVSFEESHNHDLTPAKFVPLIGTYRGLTDGDKAQVDALHAHGIRPFQIMGFLVDKKGGYRNVGFSKKDLYNYIDEVKRGKIKDGDVVAGLSYLQGKADNNPMFFFKIFMF. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00240 163 PANTHER OS01G0519700 PROTEIN 2 160 - -
Seca8g00240 163 Pfam FAR1 DNA-binding domain 3 66 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00240 Seca-Chr8 2942749 2943240 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g00240 FAR1 1.2e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00240 - - ccaj:109794460 214.927