Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00230 ATGTCCTTTGTTTTCTCATCCCTTTCTTCCCTCATGCACCCTGCCACCGTTTTTCTCCTCAAACCCATTTTCCTTCATGGCCTATCTGCCCTCCTCCACCTACTGTTGGTGGTGGCGGTTCTAGTGTCATGGGTTTGGAACAAAATCACGGTGGGTGCTACGGATGACTCTAAGGAGAAATCCAGTGACACCCTTTTTTCAGTGACCAAGTTTTGTTCTCTAGGTGTTTCTGCTTGCAATCTTGCTCTCTTCCTGTTTAATTACTTCTACTGGTATACAAGTGGTTGGTCTGAAGAAGAGCTCGTGACCCTTTTCGATTTGGCGCTCAAAACGGTTGCTTGGGGTGTTGTTTATGTTTGCTTGCTTAAGGGATTCTTCAATTCAGGTGAAAGAAGAAGATTTCCATTCCTCTTCAGAACTTGGTGCGCTTCCTACCTCTTTGTTTCCTGTTATTCCTTCGTAGTGGATAATGTTATTCTCTATGAAAACCAAGTTGCATTACCAACTCAGTACATAGTTTCTGATGTGGTATCTGCTTTGGCGGGTTTGTTCTTCTGCTACATGGGGTATTTTGTGAAAAATGAGGGTGAAGATGATAGCAGTAGTCTTCAAGAGCCTCTTTTGAATGGAGATACACAAGTCAAAGAGTCCAAGGGGAGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGATGCGTCCTCTTATAGCTCTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTCCCTCAACTGGACACCAAAGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGGGATAAACTTGAGGCTGATTGTGGTGCAATTAACCACGTGACCACACTTAAGCTGGTGAAGTTATTATTACTCACAGCTTGGAAACAGATTCTTTTCACAGCTTTTCTTGCTTTATTATACACTTTGGCTTGTTATGTTGGTCCTTATCTTATTGATGCTTTTGTTCAATACCTTGATGGAAAACAGCTATATGAAAATCAGGGCTATGTTTTGGTCTCTGCATTTTTCTTTGCAAAGGTTGTCGAGTGTCTGTCACAAACGCACTTGTGCTTTAGGTTGCAGCAAGTTGGAATTAGAATCCGGTCACTGCTTGTGACCATGATCTATAATAAAGCCTTGACAATTTCATGCCAATCAAAGCAGGGCCACACTTCTGGGGAAATAATCAATTTTATGGCTGTTGATGCTGAAAGAGTTGGAGTGTTCAGTTGGTACTTGCATGATTTGTGGTTGGTGGCTCTGCAAGTTACATTAGCCTTGTTGATATTGTATAAAAACCTTGGGCTTGCTTCAATTGCTGCTTTTGTTGCAACTGTCATTGTTATGTTGGCAAATATTCCCTTGGGATCATGGCAAGAGAAGTTTCAAAAGAAGTTGATGGGGTCAAAAGATAAGAGAATGAAGACCACGTCTGAGATTCTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGATCTCAGAAATATTGAGCAAGGCTGGTTAAGAAAATTTCTTTATACTTCAGCCATGACTACATTTGTATTTTGGGGTGCCCCCACATTTGTATCTGTGGTTACTTTTGGTACCTGTATAATTTTAGGGATCCCACTAGAATCGGGGAAGATCTTCTCAGCACTTGCAACATTCCGGATTCTTCAACAGCCCATTTATAAACTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTGCATTATTCCTTCGTCTTGATGACTTGCAGTCTGATGTTGTAGAAAAGCTTCCTTGGGATTGTTCTGATACAGCAATTGAAGTAATTGATGGGAATTTTTCTTGGAATTTATCTTCCCCTAACCCAACATTGCAAAACATAAATCTCAGAGTTTCTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGGACAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATATGGAAAGGTATGATAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTGGAGATTCTGTCATTTGGTGATCAGACGGTTATAGGAGAGCGTGGAATAAATTTGAGCGGTGGACAGAAACAAAGAGTACAAATTGCCCGTGCTCTTTACCAAGATGCTGATATATATCTGTTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAATGCTTGCTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATACTGGTCATGAAAGATGGAAATATTACTCAATGTGGAAAGTATACTGATCTACTTAACACTGGGACTGATTTTATGGAACTTGTTGGTGCACATAAAAAAGCTTTGTCTACACTTGATTCATTGGATGGAGGGACAGTATCTGATGAAATAAGTACCTTGGAACAAGATGGGAATGTCTCTGGCACGCACAGTGTTAAAGAAAAAGAGGCAAACAAAGATGAGCATAATGGTAAAACAGATGACAAAGATGAACAAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAGAGTTGGCTTTTTAGTCTATTGGAAGTATATCACAATAGCATATGGAGGAGCTCTTGTACCATTCATATTATTGGCTCAGATTCTTTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCAATCTCACCAGATGCGGAACCACCTGTTGGAGGAACAACTCTTATAGAAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCATCCTAGCCAGAGCAATGTTTCTTGTCACAGCTGGCTATAAGACAGCTACTATACTCTTTAATAAAATGCACTACTGCATTTTCCGTGCCCCCATGTCATTTTTTGATTCCACTCCTAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGACACAGACATTCCTTTTTCAATAGGGTCATTTGCCTTCACCATAATCCAGCTTCTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTCATTCCAGTGATAGCAATCAGCATCTGGTATCAGCAATATTATATACCATCAGCCCGAGAACTATCACGTTTAATTGGAGTGTGTAAAGCCCCAATCATTCAACACTTTGCTGAAACAATTTCTGGAGCTTCAACCATTAGAAGCTTTGATCAACAGTCAAGATTTCAGGAAACAAATATGAAACTGGCTGATGGGTATTCTCGACCAAAGTTCAATATAGCTGGTGCTTTGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTGCAATCACATTTGCCTTCTCCTTGATAATCTTGATATCTATTCCACAGGGAATGATAGATCCAGGCATTGCTGGTTTAGCTGTCACCTATGGACTTAATTTGAACACGATACAAGTTTCGTTGATATGGAGTCTTTGCAAATTAGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTGCATTCCTAGTGAGCCTCCCCTTGTTGTAGACGAAAATCGGCCAGATCCTTCTTGGCCCTCATATGGCGAGATAGATATACAGGACATGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGCATAACATGCAAATTCCGGGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCCGAATCATTGATCCTACTGTTGGGCGAATTATGATTGACAGCATCGACATTTCTTCAATTGGACTGCATGATTTGAGGTCTAGACTAAGTATCATTCCTCAGGATCCAACCATGTTTGAGGGGACAGTAAGAAATAATCTGGACCCCCTGGAAGAATACACTGATGAACAAATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTCACTGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTAATTCAGCAAACTCTTAGGCAACATTTCTCTGATTCCACAGTCATTACAATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTTTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACTCCCCAACAACATTGTTAGAAGATAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGTCCAACTCCAGTTTTGAGAAATCTGATGATCACTGA 4500 0.4078 MSFVFSSLSSLMHPATVFLLKPIFLHGLSALLHLLLVVAVLVSWVWNKITVGATDDSKEKSSDTLFSVTKFCSLGVSACNLALFLFNYFYWYTSGWSEEELVTLFDLALKTVAWGVVYVCLLKGFFNSGERRRFPFLFRTWCASYLFVSCYSFVVDNVILYENQVALPTQYIVSDVVSALAGLFFCYMGYFVKNEGEDDSSSLQEPLLNGDTQVKESKGSDTVTPFSNAGIFSILTFSWMRPLIALGNKKTLDLEDVPQLDTKDSVVGAFPTFRDKLEADCGAINHVTTLKLVKLLLLTAWKQILFTAFLALLYTLACYVGPYLIDAFVQYLDGKQLYENQGYVLVSAFFFAKVVECLSQTHLCFRLQQVGIRIRSLLVTMIYNKALTISCQSKQGHTSGEIINFMAVDAERVGVFSWYLHDLWLVALQVTLALLILYKNLGLASIAAFVATVIVMLANIPLGSWQEKFQKKLMGSKDKRMKTTSEILRNMRILKLQGWEMKFLSKITDLRNIEQGWLRKFLYTSAMTTFVFWGAPTFVSVVTFGTCIILGIPLESGKIFSALATFRILQQPIYKLPDTISMIAQTKVSLDRIALFLRLDDLQSDVVEKLPWDCSDTAIEVIDGNFSWNLSSPNPTLQNINLRVSHGMRVAVCGTVGTGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGRDMDMERYDKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGNITQCGKYTDLLNTGTDFMELVGAHKKALSTLDSLDGGTVSDEISTLEQDGNVSGTHSVKEKEANKDEHNGKTDDKDEQKGQLVQEEEREKGRVGFLVYWKYITIAYGGALVPFILLAQILFQVLQIGSNYWMAWATPISPDAEPPVGGTTLIEVYVGLAIGSSFCILARAMFLVTAGYKTATILFNKMHYCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPFSIGSFAFTIIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQYYIPSARELSRLIGVCKAPIIQHFAETISGASTIRSFDQQSRFQETNMKLADGYSRPKFNIAGALEWLCFRLDMLSAITFAFSLIILISIPQGMIDPGIAGLAVTYGLNLNTIQVSLIWSLCKLENKIISVERILQYTCIPSEPPLVVDENRPDPSWPSYGEIDIQDMQVRYAPHLPLVLRGITCKFRGGLKTGIVGRTGSGKSTLIQTLFRIIDPTVGRIMIDSIDISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLNQGLIEEYDSPTTLLEDKSSSFAQLVAEYTMRSNSSFEKSDDH. 1500
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00230 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 305 585 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00230 1499 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Seca8g00230 1499 SMART AAA_5 646 819 IPR003593 GO:0016887
Seca8g00230 1499 SMART AAA_5 1275 1460 IPR003593 GO:0016887
Seca8g00230 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 842 IPR003439 GO:0005524
Seca8g00230 1499 CDD ABC_6TM_ABCC_D2 930 1224 IPR044726 GO:0140359
Seca8g00230 1499 MobiDBLite consensus disorder prediction 873 904 - -
Seca8g00230 1499 MobiDBLite consensus disorder prediction 867 904 - -
Seca8g00230 1499 Gene3D - 1232 1485 IPR027417 -
Seca8g00230 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1251 1483 IPR003439 GO:0005524
Seca8g00230 1499 FunFam ABC transporter C family member 5 604 851 - -
Seca8g00230 1499 SUPERFAMILY ABC transporter transmembrane region 298 597 IPR036640 GO:0005524|GO:0016020
Seca8g00230 1499 Gene3D ABC transporter type 1, transmembrane domain 891 1230 IPR036640 GO:0005524|GO:0016020
Seca8g00230 1499 Gene3D ABC transporter type 1, transmembrane domain 285 601 IPR036640 GO:0005524|GO:0016020
Seca8g00230 1499 FunFam ABC transporter C family member 10 288 601 - -
Seca8g00230 1499 CDD ABCC_MRP_domain2 1247 1467 - -
Seca8g00230 1499 CDD ABCC_MRP_domain1 619 818 - -
Seca8g00230 1499 Pfam ABC transporter transmembrane region 305 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00230 1499 Pfam ABC transporter transmembrane region 932 1173 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00230 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1241 1479 IPR027417 -
Seca8g00230 1499 Gene3D - 606 853 IPR027417 -
Seca8g00230 1499 Pfam ABC transporter 1266 1414 IPR003439 GO:0005524
Seca8g00230 1499 FunFam ABC transporter C family member 5 893 1230 - -
Seca8g00230 1499 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 226 1486 - -
Seca8g00230 1499 FunFam ABC transporter C family member 3 1232 1484 - -
Seca8g00230 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 932 1212 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00230 1499 CDD ABC_6TM_ABCC_D1 306 593 IPR044746 GO:0140359
Seca8g00230 1499 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Seca8g00230 1499 SUPERFAMILY ABC transporter transmembrane region 930 1231 IPR036640 GO:0005524|GO:0016020
Seca8g00230 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 841 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca8g00230 Seca-Chr8 2829826 2836460 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00230 619 849 Calmodulin-binding Proteins AT2G36910 29.084 2.00e-23 106
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00230 - K05666 gmx:100777836 2485.29