Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g00230 | ATGTCCTTTGTTTTCTCATCCCTTTCTTCCCTCATGCACCCTGCCACCGTTTTTCTCCTCAAACCCATTTTCCTTCATGGCCTATCTGCCCTCCTCCACCTACTGTTGGTGGTGGCGGTTCTAGTGTCATGGGTTTGGAACAAAATCACGGTGGGTGCTACGGATGACTCTAAGGAGAAATCCAGTGACACCCTTTTTTCAGTGACCAAGTTTTGTTCTCTAGGTGTTTCTGCTTGCAATCTTGCTCTCTTCCTGTTTAATTACTTCTACTGGTATACAAGTGGTTGGTCTGAAGAAGAGCTCGTGACCCTTTTCGATTTGGCGCTCAAAACGGTTGCTTGGGGTGTTGTTTATGTTTGCTTGCTTAAGGGATTCTTCAATTCAGGTGAAAGAAGAAGATTTCCATTCCTCTTCAGAACTTGGTGCGCTTCCTACCTCTTTGTTTCCTGTTATTCCTTCGTAGTGGATAATGTTATTCTCTATGAAAACCAAGTTGCATTACCAACTCAGTACATAGTTTCTGATGTGGTATCTGCTTTGGCGGGTTTGTTCTTCTGCTACATGGGGTATTTTGTGAAAAATGAGGGTGAAGATGATAGCAGTAGTCTTCAAGAGCCTCTTTTGAATGGAGATACACAAGTCAAAGAGTCCAAGGGGAGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGATGCGTCCTCTTATAGCTCTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTCCCTCAACTGGACACCAAAGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGGGATAAACTTGAGGCTGATTGTGGTGCAATTAACCACGTGACCACACTTAAGCTGGTGAAGTTATTATTACTCACAGCTTGGAAACAGATTCTTTTCACAGCTTTTCTTGCTTTATTATACACTTTGGCTTGTTATGTTGGTCCTTATCTTATTGATGCTTTTGTTCAATACCTTGATGGAAAACAGCTATATGAAAATCAGGGCTATGTTTTGGTCTCTGCATTTTTCTTTGCAAAGGTTGTCGAGTGTCTGTCACAAACGCACTTGTGCTTTAGGTTGCAGCAAGTTGGAATTAGAATCCGGTCACTGCTTGTGACCATGATCTATAATAAAGCCTTGACAATTTCATGCCAATCAAAGCAGGGCCACACTTCTGGGGAAATAATCAATTTTATGGCTGTTGATGCTGAAAGAGTTGGAGTGTTCAGTTGGTACTTGCATGATTTGTGGTTGGTGGCTCTGCAAGTTACATTAGCCTTGTTGATATTGTATAAAAACCTTGGGCTTGCTTCAATTGCTGCTTTTGTTGCAACTGTCATTGTTATGTTGGCAAATATTCCCTTGGGATCATGGCAAGAGAAGTTTCAAAAGAAGTTGATGGGGTCAAAAGATAAGAGAATGAAGACCACGTCTGAGATTCTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGATCTCAGAAATATTGAGCAAGGCTGGTTAAGAAAATTTCTTTATACTTCAGCCATGACTACATTTGTATTTTGGGGTGCCCCCACATTTGTATCTGTGGTTACTTTTGGTACCTGTATAATTTTAGGGATCCCACTAGAATCGGGGAAGATCTTCTCAGCACTTGCAACATTCCGGATTCTTCAACAGCCCATTTATAAACTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTGCATTATTCCTTCGTCTTGATGACTTGCAGTCTGATGTTGTAGAAAAGCTTCCTTGGGATTGTTCTGATACAGCAATTGAAGTAATTGATGGGAATTTTTCTTGGAATTTATCTTCCCCTAACCCAACATTGCAAAACATAAATCTCAGAGTTTCTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGGACAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATATGGAAAGGTATGATAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTGGAGATTCTGTCATTTGGTGATCAGACGGTTATAGGAGAGCGTGGAATAAATTTGAGCGGTGGACAGAAACAAAGAGTACAAATTGCCCGTGCTCTTTACCAAGATGCTGATATATATCTGTTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAATGCTTGCTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATACTGGTCATGAAAGATGGAAATATTACTCAATGTGGAAAGTATACTGATCTACTTAACACTGGGACTGATTTTATGGAACTTGTTGGTGCACATAAAAAAGCTTTGTCTACACTTGATTCATTGGATGGAGGGACAGTATCTGATGAAATAAGTACCTTGGAACAAGATGGGAATGTCTCTGGCACGCACAGTGTTAAAGAAAAAGAGGCAAACAAAGATGAGCATAATGGTAAAACAGATGACAAAGATGAACAAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAGAGTTGGCTTTTTAGTCTATTGGAAGTATATCACAATAGCATATGGAGGAGCTCTTGTACCATTCATATTATTGGCTCAGATTCTTTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCAATCTCACCAGATGCGGAACCACCTGTTGGAGGAACAACTCTTATAGAAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCATCCTAGCCAGAGCAATGTTTCTTGTCACAGCTGGCTATAAGACAGCTACTATACTCTTTAATAAAATGCACTACTGCATTTTCCGTGCCCCCATGTCATTTTTTGATTCCACTCCTAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGACACAGACATTCCTTTTTCAATAGGGTCATTTGCCTTCACCATAATCCAGCTTCTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTCATTCCAGTGATAGCAATCAGCATCTGGTATCAGCAATATTATATACCATCAGCCCGAGAACTATCACGTTTAATTGGAGTGTGTAAAGCCCCAATCATTCAACACTTTGCTGAAACAATTTCTGGAGCTTCAACCATTAGAAGCTTTGATCAACAGTCAAGATTTCAGGAAACAAATATGAAACTGGCTGATGGGTATTCTCGACCAAAGTTCAATATAGCTGGTGCTTTGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTGCAATCACATTTGCCTTCTCCTTGATAATCTTGATATCTATTCCACAGGGAATGATAGATCCAGGCATTGCTGGTTTAGCTGTCACCTATGGACTTAATTTGAACACGATACAAGTTTCGTTGATATGGAGTCTTTGCAAATTAGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTGCATTCCTAGTGAGCCTCCCCTTGTTGTAGACGAAAATCGGCCAGATCCTTCTTGGCCCTCATATGGCGAGATAGATATACAGGACATGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGCATAACATGCAAATTCCGGGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCCGAATCATTGATCCTACTGTTGGGCGAATTATGATTGACAGCATCGACATTTCTTCAATTGGACTGCATGATTTGAGGTCTAGACTAAGTATCATTCCTCAGGATCCAACCATGTTTGAGGGGACAGTAAGAAATAATCTGGACCCCCTGGAAGAATACACTGATGAACAAATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTCACTGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTAATTCAGCAAACTCTTAGGCAACATTTCTCTGATTCCACAGTCATTACAATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTTTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACTCCCCAACAACATTGTTAGAAGATAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGTCCAACTCCAGTTTTGAGAAATCTGATGATCACTGA | 4500 | 0.4078 | MSFVFSSLSSLMHPATVFLLKPIFLHGLSALLHLLLVVAVLVSWVWNKITVGATDDSKEKSSDTLFSVTKFCSLGVSACNLALFLFNYFYWYTSGWSEEELVTLFDLALKTVAWGVVYVCLLKGFFNSGERRRFPFLFRTWCASYLFVSCYSFVVDNVILYENQVALPTQYIVSDVVSALAGLFFCYMGYFVKNEGEDDSSSLQEPLLNGDTQVKESKGSDTVTPFSNAGIFSILTFSWMRPLIALGNKKTLDLEDVPQLDTKDSVVGAFPTFRDKLEADCGAINHVTTLKLVKLLLLTAWKQILFTAFLALLYTLACYVGPYLIDAFVQYLDGKQLYENQGYVLVSAFFFAKVVECLSQTHLCFRLQQVGIRIRSLLVTMIYNKALTISCQSKQGHTSGEIINFMAVDAERVGVFSWYLHDLWLVALQVTLALLILYKNLGLASIAAFVATVIVMLANIPLGSWQEKFQKKLMGSKDKRMKTTSEILRNMRILKLQGWEMKFLSKITDLRNIEQGWLRKFLYTSAMTTFVFWGAPTFVSVVTFGTCIILGIPLESGKIFSALATFRILQQPIYKLPDTISMIAQTKVSLDRIALFLRLDDLQSDVVEKLPWDCSDTAIEVIDGNFSWNLSSPNPTLQNINLRVSHGMRVAVCGTVGTGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGRDMDMERYDKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGNITQCGKYTDLLNTGTDFMELVGAHKKALSTLDSLDGGTVSDEISTLEQDGNVSGTHSVKEKEANKDEHNGKTDDKDEQKGQLVQEEEREKGRVGFLVYWKYITIAYGGALVPFILLAQILFQVLQIGSNYWMAWATPISPDAEPPVGGTTLIEVYVGLAIGSSFCILARAMFLVTAGYKTATILFNKMHYCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPFSIGSFAFTIIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQYYIPSARELSRLIGVCKAPIIQHFAETISGASTIRSFDQQSRFQETNMKLADGYSRPKFNIAGALEWLCFRLDMLSAITFAFSLIILISIPQGMIDPGIAGLAVTYGLNLNTIQVSLIWSLCKLENKIISVERILQYTCIPSEPPLVVDENRPDPSWPSYGEIDIQDMQVRYAPHLPLVLRGITCKFRGGLKTGIVGRTGSGKSTLIQTLFRIIDPTVGRIMIDSIDISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLNQGLIEEYDSPTTLLEDKSSSFAQLVAEYTMRSNSSFEKSDDH. | 1500 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g00230 | 1499 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 305 | 585 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g00230 | 1499 | ProSitePatterns | ABC transporters family signature. | 744 | 758 | IPR017871 | GO:0005524|GO:0016887 | |
Seca8g00230 | 1499 | SMART | AAA_5 | 646 | 819 | IPR003593 | GO:0016887 | |
Seca8g00230 | 1499 | SMART | AAA_5 | 1275 | 1460 | IPR003593 | GO:0016887 | |
Seca8g00230 | 1499 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 619 | 842 | IPR003439 | GO:0005524 | |
Seca8g00230 | 1499 | CDD | ABC_6TM_ABCC_D2 | 930 | 1224 | IPR044726 | GO:0140359 | |
Seca8g00230 | 1499 | MobiDBLite | consensus disorder prediction | 873 | 904 | - | - | |
Seca8g00230 | 1499 | MobiDBLite | consensus disorder prediction | 867 | 904 | - | - | |
Seca8g00230 | 1499 | Gene3D | - | 1232 | 1485 | IPR027417 | - | |
Seca8g00230 | 1499 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1251 | 1483 | IPR003439 | GO:0005524 | |
Seca8g00230 | 1499 | FunFam | ABC transporter C family member 5 | 604 | 851 | - | - | |
Seca8g00230 | 1499 | SUPERFAMILY | ABC transporter transmembrane region | 298 | 597 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g00230 | 1499 | Gene3D | ABC transporter type 1, transmembrane domain | 891 | 1230 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g00230 | 1499 | Gene3D | ABC transporter type 1, transmembrane domain | 285 | 601 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g00230 | 1499 | FunFam | ABC transporter C family member 10 | 288 | 601 | - | - | |
Seca8g00230 | 1499 | CDD | ABCC_MRP_domain2 | 1247 | 1467 | - | - | |
Seca8g00230 | 1499 | CDD | ABCC_MRP_domain1 | 619 | 818 | - | - | |
Seca8g00230 | 1499 | Pfam | ABC transporter transmembrane region | 305 | 572 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g00230 | 1499 | Pfam | ABC transporter transmembrane region | 932 | 1173 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g00230 | 1499 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1241 | 1479 | IPR027417 | - | |
Seca8g00230 | 1499 | Gene3D | - | 606 | 853 | IPR027417 | - | |
Seca8g00230 | 1499 | Pfam | ABC transporter | 1266 | 1414 | IPR003439 | GO:0005524 | |
Seca8g00230 | 1499 | FunFam | ABC transporter C family member 5 | 893 | 1230 | - | - | |
Seca8g00230 | 1499 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 226 | 1486 | - | - | |
Seca8g00230 | 1499 | FunFam | ABC transporter C family member 3 | 1232 | 1484 | - | - | |
Seca8g00230 | 1499 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 932 | 1212 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g00230 | 1499 | CDD | ABC_6TM_ABCC_D1 | 306 | 593 | IPR044746 | GO:0140359 | |
Seca8g00230 | 1499 | Pfam | ABC transporter | 637 | 771 | IPR003439 | GO:0005524 | |
Seca8g00230 | 1499 | SUPERFAMILY | ABC transporter transmembrane region | 930 | 1231 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g00230 | 1499 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 615 | 841 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g00230 | Seca-Chr8 | 2829826 | 2836460 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g00230 | 619 | 849 | Calmodulin-binding Proteins | AT2G36910 | 29.084 | 2.00e-23 | 106 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g00230 | - | K05666 | gmx:100777836 | 2485.29 |