Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00227 ATGTCCTTTGTTTTCTCATCCCTTTCTTCCCTCATGCACCCTGCCACCGTTTTTCTCCTCAAACCCATTTTCCTTCATGGCCTATCTGCCCTCCTCCACCTACTGTTGGTGGTGGCAGTTTTAGTGTCATGGGTTTGGAAGAAAATCACGGCGGGTGCTAGGGATGACTCTAAGGAGAAATCCAGTGACACCCTTTTTACAGCGACTAAGTTTTGTTCTCTTGGTGTTTCTGCTTGCAATCTTGCTCTCTTCCTGTTTAATTACTTCTACTGGTATAGAAGTGGTTGGTCTGAAGAAGAGCTCGTGACCCTTTTCGATTTGGCGCTCAAAACGGTTGCTTGGGGTGTTGTTTATGTTTGCTTGCTTAAGGGGTTCTTCAATTCAGGTGAAAGAAGAAGATTTCCATTCCTCTTCAGAACTTGGTGCGCTTTCTACCTCTTTGTTTCCTGTTATTCCTTCGTAGTTGACAATGTTATTCTCTATGAAAACCACGTTGCATTACCAACTCAGTACATAGTTTCTGATGTGGTATCTGCTTTGGCGGGTTTGTTCTTCTGCTACATGGGGTATTTTGTGAAAAATGAGGGTGAAGATGATAGCAGTAGTCTTCAAGAGCCTCTTTTGAATGGAGATACACGAGTCAAAGAGTCCAAAGGGAGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTTCGCTTGGATGCGTCCTCTTATAGCTCTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTCCCTCAACTGGACAGCAAAGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGGGATAAACTTGAGGCTGATTGTGGTGCAATTAACCACGTGACCACACTTAAGCTGGTGAAGTTATTATTAATCTCAGCTTGGAAAGAGATTCTTTTCACAGCTTTTCTTTGTTTAATGAATACGTTGGCTTCTTATGTTGGTCCTTATCTTATTGATGCCTTTGTTCAATACCTTGATGGACAACGGCTATACGAAAATCAGGGCTATGTTTTGGTCTCTGCATTTTTCTTTGCAAAGCTTGTTGAGTGTCTGTCACAAAGGCACTGGTTCTTTAGGTTGCAGCAAATTGGAATTCGAATCAGGTCACTACTTGTGACAATGATCTATAATAAAGCCTTGACAATTTCATGTCAATCAAAGCAGGGCCACACTTCTGGGGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGAGTGTTCAGTTGGTACTTGCATGATTTGTGGATGGTGGCTCTGCAAGTTACATTAGCCTTGTTGATTTTGTATAAAAACCTTGGGCTTGCTTCAATTGCTGCTTTTGTTACAACTGTCATTGTTATGTTGGCAAATATTCCCTTGGGATCATGGCAAGAGAAGTTTCAAAAGAAGCTGATGGAGTCAAAAGATACAAGAATGAAGACCACATCTGAGATTCTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGATCTCAGGAACACTGAGCAAGGCTGGTTAAGAAAATTTCTTTATACTTCAGCCATGACTACATTTGTATTTTGGGGTGCCCCCACATTTGTATCTGTTGTTACTTTTGGTACTTGTATGATTTTAGGGATCCCACTTGAATCAGGGAAGATCTTGTCAGCACTTGCAACATTCCGGATCCTTCAAGAGCCCATTTATAATCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTGCATCTTTCCTTCGTCTTGATGACTTGCAGTCTGATGTTGTAGAAAAGCTTCCTCGGGATTGTTCTGATACAGCAATTGAAGTAATTGATGGGAATTTTTCTTGGAATTTATCTTCCCCTAATCCAACATTGCAAAACATAAATCTCAGAGTTTCTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGGTCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAGAGACATGGATAGGGAAAGGTATGATAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTGGAGATTTTGTCATTTGGTGATCAGACTGTTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATTGCTCGTGCTCTTTACCAAGATGCTGATATATATCTGTTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAATGCTTGTTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTAACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATACTGGTCATGAAAGATGGAAATATTACTCAATGTGGAAAGTATACTGATCTACTTAACACTGGGACTGATTTTATGGAACTTGTTGGTGCACACAAAAAAGCTTTGTCTACACTTGATTCATTGGATGGAGGGACAGTATCTGATGAAATAAGTACCTTGGAACAAGATGGAAATGTCTCTGGCACACACAGTGTTAAAGAAAAAGAGGCAAACAACAGCAATGGTAAAATAGATGACAATGATGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAGAGTTGGCTTTTCAGTCTATTGGAAGTATATCACAACAGCATATGGAGGAGCTCTTGTACCATTCATATTATTGGCTCAGATTCTTTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCAATCTCACCAGATGCGGAACCACCTGTTGGAGGAACAACTCTTATAGAAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCATCCTAGCCAGAGCAATGTTTCTTGTCACAGCTGGCTATAAGACAGCTACTATACTCTTTAATAAAATGCACTATTGCATTTTCCGTGCCCCCATGTCATTTTTTGATTCCACTCCTAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGACACGGACATTCCTTATTCAATTGGGTCATTTGCCTTCACCATGATCCAGCTTCTGGGAATTATAGCAGTGATGTCTCAGGTTGCTTGGCAGGTTTTCATTGTCTTCATTCCAGTGATAGCAATCAGTATCTGGTATCAGCAATATTATATACCATCAGCCCGAGAACTATCACGTTTAGTTGGAGTATGCAAAGCCCCAGTCATTCAACACTTTGCTGAAACTATTTCTGGAGCTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAACAAATATGAAACTGGCTGATGGGTATTCTCGGCCAAAATTCAATATTGCTGGTGCTATGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTGCAATCACATTTGCCTTCTCCTTGATATTCTTGATATCTATTCCACAGGGAATCATAGATCCAGGCATTGCTGGTTTAGCTGTAACCTACGGGCTTAATTTAAACATGATACAAGCTTGGATGATATGGAGTCTTTGCAATTTGGAGAACAAAATTATATCAGTAGAAAGAATAGTTCAGTATACTTGCATTCCCAGTGAGCCTCCCCTTGTTGTAGATGAAAATCGGCCAGATCCTTCTTGGCCCTCATATGGCGAGATTGATATACAGGACATGCAGGTCCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGCATAACATGCACATTCCGGGGAGGACTAAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCCGAATCATTGATCCTACTGTTGGGCGAATTATGATTGACAGCATCGACATTTCTTCTATTGGACTGCACGATTTGAGGTCTAGACTAAGCATCATTCCTCAGGATCCAACCATGTTTGAGGGGACAGTAAGAAATAATCTGGACCCCCTGGAAGAGTACACTGATGAACAAATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTTACTGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTGTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTGCATCAGTTGATACAGCTACGGATAATTTAATTCAGCAAACTCTTAGGCAACATTTCTCTGATTCCACAGTCATTACAATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTTTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACTCCCCAGCAACATTATTAGAAGATAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGTCCAACTCCAGTTTTGAGAAATCTGATGATCACTGA 4494 0.4085 MSFVFSSLSSLMHPATVFLLKPIFLHGLSALLHLLLVVAVLVSWVWKKITAGARDDSKEKSSDTLFTATKFCSLGVSACNLALFLFNYFYWYRSGWSEEELVTLFDLALKTVAWGVVYVCLLKGFFNSGERRRFPFLFRTWCAFYLFVSCYSFVVDNVILYENHVALPTQYIVSDVVSALAGLFFCYMGYFVKNEGEDDSSSLQEPLLNGDTRVKESKGSDTVTPFSNAGIFSILTFAWMRPLIALGNKKTLDLEDVPQLDSKDSVVGAFPTFRDKLEADCGAINHVTTLKLVKLLLISAWKEILFTAFLCLMNTLASYVGPYLIDAFVQYLDGQRLYENQGYVLVSAFFFAKLVECLSQRHWFFRLQQIGIRIRSLLVTMIYNKALTISCQSKQGHTSGEIINFMTVDAERVGVFSWYLHDLWMVALQVTLALLILYKNLGLASIAAFVTTVIVMLANIPLGSWQEKFQKKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITDLRNTEQGWLRKFLYTSAMTTFVFWGAPTFVSVVTFGTCMILGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPRDCSDTAIEVIDGNFSWNLSSPNPTLQNINLRVSHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGRDMDRERYDKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGNITQCGKYTDLLNTGTDFMELVGAHKKALSTLDSLDGGTVSDEISTLEQDGNVSGTHSVKEKEANNSNGKIDDNDEPKGQLVQEEEREKGRVGFSVYWKYITTAYGGALVPFILLAQILFQVLQIGSNYWMAWATPISPDAEPPVGGTTLIEVYVGLAIGSSFCILARAMFLVTAGYKTATILFNKMHYCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYSIGSFAFTMIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQYYIPSARELSRLVGVCKAPVIQHFAETISGASTIRSFDQQSRFQETNMKLADGYSRPKFNIAGAMEWLCFRLDMLSAITFAFSLIFLISIPQGIIDPGIAGLAVTYGLNLNMIQAWMIWSLCNLENKIISVERIVQYTCIPSEPPLVVDENRPDPSWPSYGEIDIQDMQVRYAPHLPLVLRGITCTFRGGLKTGIVGRTGSGKSTLIQTLFRIIDPTVGRIMIDSIDISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLNQGLIEEYDSPATLLEDKSSSFAQLVAEYTMRSNSSFEKSDDH. 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00227 1497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 930 1210 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00227 1497 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 226 1484 - -
Seca8g00227 1497 Gene3D ABC transporter type 1, transmembrane domain 891 1228 IPR036640 GO:0005524|GO:0016020
Seca8g00227 1497 Gene3D ABC transporter type 1, transmembrane domain 285 600 IPR036640 GO:0005524|GO:0016020
Seca8g00227 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1239 1477 IPR027417 -
Seca8g00227 1497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 585 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00227 1497 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Seca8g00227 1497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1249 1481 IPR003439 GO:0005524
Seca8g00227 1497 Pfam ABC transporter 1264 1412 IPR003439 GO:0005524
Seca8g00227 1497 Gene3D - 601 853 IPR027417 -
Seca8g00227 1497 FunFam ABC transporter C family member 5 604 851 - -
Seca8g00227 1497 FunFam ABC transporter C family member 3 1230 1482 - -
Seca8g00227 1497 FunFam ABC transporter C family member 10 288 601 - -
Seca8g00227 1497 CDD ABC_6TM_ABCC_D2 928 1222 IPR044726 GO:0140359
Seca8g00227 1497 CDD ABCC_MRP_domain1 619 818 - -
Seca8g00227 1497 SUPERFAMILY ABC transporter transmembrane region 298 598 IPR036640 GO:0005524|GO:0016020
Seca8g00227 1497 MobiDBLite consensus disorder prediction 881 904 - -
Seca8g00227 1497 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Seca8g00227 1497 CDD ABCC_MRP_domain2 1245 1465 - -
Seca8g00227 1497 Pfam ABC transporter transmembrane region 930 1173 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00227 1497 Pfam ABC transporter transmembrane region 305 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g00227 1497 FunFam ABC transporter C family member 5 891 1228 - -
Seca8g00227 1497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 842 IPR003439 GO:0005524
Seca8g00227 1497 MobiDBLite consensus disorder prediction 868 904 - -
Seca8g00227 1497 Gene3D - 1230 1483 IPR027417 -
Seca8g00227 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 841 IPR027417 -
Seca8g00227 1497 SUPERFAMILY ABC transporter transmembrane region 928 1229 IPR036640 GO:0005524|GO:0016020
Seca8g00227 1497 SMART AAA_5 1273 1458 IPR003593 GO:0016887
Seca8g00227 1497 SMART AAA_5 646 819 IPR003593 GO:0016887
Seca8g00227 1497 CDD ABC_6TM_ABCC_D1 306 593 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00227 Seca-Chr8 2797929 2804793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00227 619 849 Calmodulin-binding Proteins AT2G36910 29.880 4.24e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00227 - K05666 gmx:100777836 2534.21