Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00209 ATGAGATTATTATCAGTTTTTAAAGTTTTGGTTTTGGTTTTGGTTTTTCCAGTTCTGTTATTGGTGTGGTGTGTTCAGGTGCAAGGTGATAGTAACAATACTAGAAACTTCATTACTTGGGATGACTTCATAGTGGATGAAGAGAGTCTAGCCTCCAACGTTGGTGGTCAAGTTATTGTGGTGGATCAGAATGGTAATGGAGATTCAACAACTGTTCAAGGGGCTGTTGATATGGTTCCAGAAAACAACACAGAAAGGGTGAAGATATATATTTATCCTGGAACTTACAGAGAAAGAGTGCATGTGCCAAAAAGCAAGCCATTTATATCATTTATAGGCAAACCCAATATAACAGTGAATGCCAATGTAACAGACATTGCCAATGCCTTACCTATTATTACAAATAGTACTAAGGCATCAGATAAAGGCTCAGATGGGCAAGAAATGGGCACAGTTAGTACAGCAACTGTATGGGTAGAATCTGATTTCTTCTGTGCAACTGTTCTTACTATTGAGGAGTGTTTGCTGTACTCTGTGGCTGAGTATTGGGGAGCAATTGCAGCTCATCACAGGGAATCAGCAGAGGAAGATACAGGATTTTCATTTGTTGGTTGCACGATCAAAGGAACAGGTAGTATCTTGCTTGGGAGAGCTTGGGGGGAATATGCCACAACAATATATTCATACTGTGACATGGATGATATCATTAGCCCCATGGGATGGAGTGATTGGGATGATCCATCTAGACAGAGGACTGCAATGTTTGGGGAGTATCAGTGTTCAGGAAAAGGATCAAATAGAACTGAGAGGGAAGGTGGCCATGGTGGTGTTAGGAATTACATTAGTTGGGAAGATTTGTTGGTAGATGGAAGTTTGGCCGTGAAGTCCAATAACGAGGTTCGAGTCATTGTGGTTGATCAACATGGCAAGGGACATTCCAAAACTGTTCAAGGAGCAGTGGATATGGTTCCAGATCATAACAGACAAAGGGTCAAAATATACATTTATCCAGGACTTTACAGAGAAAAAGTGCTTGTGCCAAACACCAAGCCTTATATATCATTTATAGGTAAAAGAAATGAAACAGCAAGTGCTGTAATTTCTTGGAACAGTAAGTCATCTGACAGAGGTCCAAATGGCCAAGCATTAGGGACCTATGGTTCAGCAACTGTAGCAGTTGAATCAGATTATTTTTGTGCAACTGAGATCACTTTTGAGAACACAGTGGTTGCAGCACCTGGTGGAGAAGGAATGCAAGCAGTGGCACTGAGGGTAGACAGTAATAAAGCCATGTTCTATAGAGTTAAGATTAAGGGAACACAGGACACTCTCTTGGACAACACAGGAACCCATTACTACTACAGGTGTCTCATTCAAGGAAAAGTTGATTTTATCTTTGGCAGTGCTAAATCACTCTTTGAGAAGTGTCATCTTCAGTCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCACAGGGATTCACCACATGAAGACACAGGCTTTTCTTTTGTAGGGTGTGGTATAAGAGGAACTGGTAGTGTGTACCTTGGTAGAGCATGGGGGAACTATTCAAGAATAATATACTCAAATTGTAATATGGAGGATATTATTAATCCTGAAGGATGGTCAGAATGGAATCATCCAGAAAGAAAGAAGTATAATATTTTGTATTTCAGGACTGCAGTGTTTGGTGAGTACCAATGCCATGGAAGAGGGGCAGATAGAAGACATAGGGTGCCTTGGTCAAAATCATTCAGCTATGAGGAAGTAACGCCATTCCTGGACAAGAGCTTCATAAATGGAGATCAGTGGCTTAGACTGTAG 1827 0.4089 MRLLSVFKVLVLVLVFPVLLLVWCVQVQGDSNNTRNFITWDDFIVDEESLASNVGGQVIVVDQNGNGDSTTVQGAVDMVPENNTERVKIYIYPGTYRERVHVPKSKPFISFIGKPNITVNANVTDIANALPIITNSTKASDKGSDGQEMGTVSTATVWVESDFFCATVLTIEECLLYSVAEYWGAIAAHHRESAEEDTGFSFVGCTIKGTGSILLGRAWGEYATTIYSYCDMDDIISPMGWSDWDDPSRQRTAMFGEYQCSGKGSNRTEREGGHGGVRNYISWEDLLVDGSLAVKSNNEVRVIVVDQHGKGHSKTVQGAVDMVPDHNRQRVKIYIYPGLYREKVLVPNTKPYISFIGKRNETASAVISWNSKSSDRGPNGQALGTYGSATVAVESDYFCATEITFENTVVAAPGGEGMQAVALRVDSNKAMFYRVKIKGTQDTLLDNTGTHYYYRCLIQGKVDFIFGSAKSLFEKCHLQSIAENYGAIAAHHRDSPHEDTGFSFVGCGIRGTGSVYLGRAWGNYSRIIYSNCNMEDIINPEGWSEWNHPERKKYNILYFRTAVFGEYQCHGRGADRRHRVPWSKSFSYEEVTPFLDKSFINGDQWLRL. 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00209 608 Gene3D - 297 608 IPR012334 -
Seca8g00209 608 SUPERFAMILY Pectin lyase-like 57 271 IPR011050 -
Seca8g00209 608 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 295 607 - -
Seca8g00209 608 Pfam Pectinesterase 185 270 IPR000070 GO:0030599|GO:0042545
Seca8g00209 608 Pfam Pectinesterase 303 603 IPR000070 GO:0030599|GO:0042545
Seca8g00209 608 Pfam Pectinesterase 59 116 IPR000070 GO:0030599|GO:0042545
Seca8g00209 608 SUPERFAMILY Pectin lyase-like 302 606 IPR011050 -
Seca8g00209 608 Gene3D - 171 285 IPR012334 -
Seca8g00209 608 FunFam Pectinesterase 298 608 - -
Seca8g00209 608 Gene3D - 44 170 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00209 Seca-Chr8 2564743 2575391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00209 272 553 Carbohydrate Esterase AT5G55590 60.066 4.56e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00209 K01051 - gmx:100804220 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00209 8 2564743 2575391 Seca8g00209 8 2564743 2575391 ECH