Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00202 ATGGCCAACAATGGTGCAAAGGAGTCCATGCTGTCAGGATCACTGGATCCTGCAGCTCAAAAAGATAAATTGCAGTTAAAGAAAAGAAGATTCCTCCGTTCTAGAAGTGCACCTCACACAGCTCTTCCTCCTCCTGAGACAAATGTCAATGAATCAATTCCCCATTCTAAGTCCATATTTAGGAATTTACATCCAAGCTTTAGAAAAGTGGCCATATGCCTTGCAGTCTATTTAGGTATAGGTGTTTTCATCTTCTACCTTTTCAGGAACCAGATCAAGGGGCTGAAAACAGACAGATTTCTTGATGCTCTATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCCCAATAGTGACCTTACAAAACTTCTTGCTTGTGCTTTTGTTTTCTCTGGAATGGCATTGATTGGACTAATCCTAAGCAAAGCAGCAGACTACTTGGTTGAGAAACAGGAAATTTTGCTTGTTAAAGCTATGCACATGCGCCAAAAAGTTGGTCCAACTGAAATTCTAAAGGAGGTTGAGATCAATAAAACAAGATACAAATTCATTCTGGTCTTTTTCATTCTTTTGATTCTCATTATTGCAGGGACAGTTTTCTTGGTCACTGTTGAGAAATTGGATACTATTGATGCCTTCTACTGTGTTTGTGCTACAATCACAACCCTGGGTTATGGGGATAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTCTTTTGGATATTGACAGGTACTATTTGTGTAGCTCTGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAAGCAAACAAAAGGCACTGGTCAAGTGGGTTCTTGAAAGGAAAATGACCAATTTAGATTTGGAGGCTGCTGATCTTGATGGCAATGGGACTGTTGGGGCTGCTGAATTTGTAATCTATAAGCTCAAGGAGATGGGGAAGATTAATCAAGAAGATATATCACTTGTGATGAAGGAGTTTGAAGAGCTTGACGTTGATCAGTCTGGTACATTGTCTATTTCTGATATAACACTTGCTCAGTCATCCTAG 1050 0.3952 MANNGAKESMLSGSLDPAAQKDKLQLKKRRFLRSRSAPHTALPPPETNVNESIPHSKSIFRNLHPSFRKVAICLAVYLGIGVFIFYLFRNQIKGLKTDRFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALIGLILSKAADYLVEKQEILLVKAMHMRQKVGPTEILKEVEINKTRYKFILVFFILLILIIAGTVFLVTVEKLDTIDAFYCVCATITTLGYGDKSFSTQAGRIFAVFWILTGTICVALFFLYIAELNTESKQKALVKWVLERKMTNLDLEAADLDGNGTVGAAEFVIYKLKEMGKINQEDISLVMKEFEELDVDQSGTLSISDITLAQSS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00202 349 SUPERFAMILY Voltage-gated potassium channels 63 168 - -
Seca8g00202 349 Gene3D - 254 349 - -
Seca8g00202 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Seca8g00202 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Seca8g00202 349 SUPERFAMILY EF-hand 284 345 IPR011992 -
Seca8g00202 349 FunFam Two-pore potassium channel 1 168 276 - -
Seca8g00202 349 SUPERFAMILY Voltage-gated potassium channels 181 282 - -
Seca8g00202 349 Gene3D - 190 253 - -
Seca8g00202 349 Pfam Ion channel 72 153 IPR013099 -
Seca8g00202 349 Pfam Ion channel 194 266 IPR013099 -
Seca8g00202 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Seca8g00202 349 Gene3D - 64 158 - -
Seca8g00202 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 71 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca8g00202 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca8g00202 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00202 Seca-Chr8 2514726 2517603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00202 46 349 Ion Channels AT5G55630 64.706 8.95e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00202 K05389 - gmx:100777388 536.569