Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00197 ATGGCGGATTCGGACAACGAGTCGGGAGGGGCACAGAACGCGGGAGGGAACAACGAGTTATCGCCACGGGAGCAGGACAGGTTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCACTTCCGGCGAACGCGAAGATCTCGAAGGACGCCAAAGAAACAGTTCAGGAATGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGACAAGTGTCAGAGGGAGAAGCGCAAGACCATCAATGGCGACGACTTGCTTTGGGCCATGACTACCTTAGGCTTCGAGGACTACGTTGAGCCTCTCAAGGTATACCTCCAGCGCTTCAGAGAGATCGAAGGCGAGAAAACCGTAGCGGCGCGTGACAAGGACATCAACGTCGCTTCTTCCGCCGCTGGCGGTAGTTACGACTACGCAGCTCCAATGGGAATGATGATGCATCAGCATCAGGGACACGTGTATGGCTCTGGTGGTTTTCATCAAGTGCCTGTCACTGGTGCAAGTGGTGGTGCTCCTGTTATGGGTAAGGGTGGGCCCAGTTATCCTGCTCCTGGATCTAATGCAGGAAGACCAAGAACGTGTATCTGTTCATCGCATCAGGCGTAA 612 0.549 MADSDNESGGAQNAGGNNELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGEKTVAARDKDINVASSAAGGSYDYAAPMGMMMHQHQGHVYGSGGFHQVPVTGASGGAPVMGKGGPSYPAPGSNAGRPRTCICSSHQA. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00197 203 SUPERFAMILY Histone-fold 25 122 IPR009072 GO:0046982
Seca8g00197 203 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g00197 203 MobiDBLite consensus disorder prediction 184 203 - -
Seca8g00197 203 FunFam Nuclear transcription factor Y subunit B-3 17 141 - -
Seca8g00197 203 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca8g00197 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Seca8g00197 203 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Seca8g00197 203 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Seca8g00197 203 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Seca8g00197 203 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g00197 203 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982
Seca8g00197 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00197 Seca-Chr8 2479394 2481478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00197 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 88.525 1.42e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca8g00197 CBFD_NFYB_HMF 1.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00197 K08065 - gmx:100813580 291.197