Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00193 ATGCGGCAAGTTCTTCCACCACAAGCAAAGATCACTGATGAGTGTAAGGAAGCAATGGTTGAATGTGCAGCTAATTTCATCACCTTCATCACTAAAGAGGCTAGCCGCCAATGCAAACTTGAGCACCGTAAAACTATCATTGCTGAAGATGTGGTGTGTAATATGGGGAAGTTAGGTTTTGATAACTATGCTGAGGTTTGCAATCGCTTCCTCCAACGCTATCGTCAGAATGCAGCTATTCCTTATGTTCCTACACAAGAATCGTCTATTATAGATGGTGTGCCACTGCTGCCACCAGCTTTTGATGCTCCTAGTTTCCCGGTTGGTCAATACCCATTTCCTGACTCAACAAAAATGGATGGATTTTACATCGATGAGTCAAGTGGGGGCGACTCAAGCAATGCCAATGTTCGCAATGATTCTTTTGCTTATTTCAATCCTGACGACAACATTGATAACTGA 462 0.4307 MRQVLPPQAKITDECKEAMVECAANFITFITKEASRQCKLEHRKTIIAEDVVCNMGKLGFDNYAEVCNRFLQRYRQNAAIPYVPTQESSIIDGVPLLPPAFDAPSFPVGQYPFPDSTKMDGFYIDESSGGDSSNANVRNDSFAYFNPDDNIDN. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00193 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 51 IPR003958 -
Seca8g00193 153 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 78 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca8g00193 153 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Seca8g00193 153 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Seca8g00193 153 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Seca8g00193 153 Gene3D Histone, subunit A 1 88 IPR009072 GO:0046982
Seca8g00193 153 MobiDBLite consensus disorder prediction 127 153 - -
Seca8g00193 153 MobiDBLite consensus disorder prediction 127 143 - -
Seca8g00193 153 SUPERFAMILY Histone-fold 1 78 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00193 Seca-Chr8 2451599 2452060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00193 1 95 CCAAT-HAP3 Transcription Factor Family AT1G21970 44.211 7.82e-24 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca8g00193 CBFD_NFYB_HMF 3e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00193 K08065 - twl:119989291 111.309