Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00190 ATGCATCCCAAAAGAACCTTCTTCTTCACGCTCTTCTCGATCTTCTTCGAAGCAACCTTCGTCTCCGGCAACGTGAGCTTCAACTTCCCTTATTTCACCATCAACAACAACATCACCCTGTTCGGCGATTCCTACCTAAGGAACGGCGTCGTTGGCCTCACCAGACCCATCACCACTCCCACTTCCAGCACCGGAGCCATAGCATACTCCAATCCTATCTCTCTCTTCGACCCTCAAACCAACACAACCTCCTCCTTCTCCACAACCTTCTCTTTCTCCATCACCAACATCAACCCTACCTCCTTCGGTAACGGCCTCGCTTTCTTCCTCTCCCCTAACAACCTCACATCCGCCAATCACGCCGCATCTCTCGGCCTCCCTAACAACTTCGTGGCAGTTGAATTCGATACCCGCCAAAATAACCGTTTCAACGACCCTAACGAGAATCACGTGGGCTTAGACATCAACACTATGAACTCTCTCAAAACAGGGGACCCTATCTTGCACGGCATTGATCTCAAGAGCGGAAACACCATCAACGCTTGGATCGATTACAAGTCCGATCGAACGGTTCTCGACGTTTTCTTGAGTTACTCTCGCTCTAAGCCCTTGGATCCTATCCTCACTGTTCGTGTTGATCTTTCTGAGCACTTCAACGACGTCGTTTACGTTGGGTTCTCTGCTTCCACTGAAGGAAGTACAGAGCTTCATCAAATTCAAAGTTGGAGCTTTCACACCATTGGGTTGAAGTTGAAGAAGCCTCACAATGTTTCTGACAATTCCGTGAGTGTGACAGTGGGTGTTCATGCTTCAGGTTCAGCCAAGAACCATGGCAAGAGGGTTGGGATTGGTTTTGCTGTTGCAGGTCCTGTTTTTTTCTGTGTGGCGTTTTTTATCTTGTTAGGGTTTGTGAAATGGAAAGGTGTGAGAAAAGGGAAAGGTTTCAAGGGTTTTACTACTACTGCTACTGGGTTTGTTGTGTGTCCTAGGGAGTTTGATTACAAAGAGTTGAAATCTGCTACCAGAGAGTTTCATCCAAGTAGGATCGTTGGTCATGGATCTTTTGGGACTGTGTATAAAGCTTTCTTTATATCTTCAGGAACAATTGCTGCTGTGAAAAGGTCTAGACATTCCCATGAAGGAAAGACAGAATTTTTGGCTGAATTGAACATTATAGCTGGTTTAAGGCACAAGAATTTGGTGCAGCTTCAAGGTTGGTGTGTTGAGAAGGGAGAGTTGTTGCTTGTGTATGATTTCATGCCTAATGGAAGCTTGGACAAGATGCTTTACAAGGATCCTGAAAGGGGGAAATTGTTGAATTGGTCTCATAGGGTTAATATTGCTCTTGGGTTGGCTTCTGTGTTGGTTTATCTTCATCAAGAGTGTGAGCAGAGGGTGATTCATAGGGATATTAAGACTGGGAATATATTGCTGGATGGGAATTTTAATCCTAGGTTGGGGGATTTTGGATTGGCAAAACTAATGGATCATGATAAGAGCCCTGTTTCAACATTGACTGCTGGAACTATGGGGTACCTTGCACCTGAGTATCTTCAATATGGGAAGGCTAATGATAAGACAGATGTTTTTAGCTATGGGGTGGTTGTGCTTGAGGTGGCTTGTGGGAAGAGGCCAATTGAAAGGGAAGGGTCAAAGATGGTAAATTTGGTTGATTGGGTTTGGGGGTTGCACTCTGAAGGGAAGATTATTGAGGCAGCAGATAAAAGGTTGAATGGGGAATTTGAGGAGGAGGAAATGAGGAAGCTTTTGCTATTGGGGTTGTGTTGTGCTAACCCTGATAGTGCTGAGAGGCCTTCCATGAGAAGGGTCATGCAGATACTCAACAATGAAGCTGGGCCAATTGTTGTGGCAAAAGTGAAGCCATGCCTCACATTCTCATCTGATTTGCCCCTCACTATTGATGAGATTGTTAAGGAGGCTGAAGAAGAATCCAATATCAGCCAGTCTATGTGTGAGATAAAAATCGGCTGA 1992 0.4528 MHPKRTFFFTLFSIFFEATFVSGNVSFNFPYFTINNNITLFGDSYLRNGVVGLTRPITTPTSSTGAIAYSNPISLFDPQTNTTSSFSTTFSFSITNINPTSFGNGLAFFLSPNNLTSANHAASLGLPNNFVAVEFDTRQNNRFNDPNENHVGLDINTMNSLKTGDPILHGIDLKSGNTINAWIDYKSDRTVLDVFLSYSRSKPLDPILTVRVDLSEHFNDVVYVGFSASTEGSTELHQIQSWSFHTIGLKLKKPHNVSDNSVSVTVGVHASGSAKNHGKRVGIGFAVAGPVFFCVAFFILLGFVKWKGVRKGKGFKGFTTTATGFVVCPREFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLAELNIIAGLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKMLYKDPERGKLLNWSHRVNIALGLASVLVYLHQECEQRVIHRDIKTGNILLDGNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKANDKTDVFSYGVVVLEVACGKRPIEREGSKMVNLVDWVWGLHSEGKIIEAADKRLNGEFEEEEMRKLLLLGLCCANPDSAERPSMRRVMQILNNEAGPIVVAKVKPCLTFSSDLPLTIDEIVKEAEEESNISQSMCEIKIG. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00190 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 249 IPR013320 -
Seca8g00190 663 ProSiteProfiles Protein kinase domain profile. 344 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00190 663 CDD lectin_legume_LecRK_Arcelin_ConA 25 248 IPR001220 GO:0030246
Seca8g00190 663 CDD STKc_IRAK 350 616 - -
Seca8g00190 663 Gene3D Transferase(Phosphotransferase) domain 1 420 624 - -
Seca8g00190 663 SMART serkin_6 344 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00190 663 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Seca8g00190 663 Gene3D - 23 267 - -
Seca8g00190 663 Gene3D Phosphorylase Kinase; domain 1 317 419 - -
Seca8g00190 663 Pfam Protein kinase domain 345 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00190 663 ProSitePatterns Legume lectins beta-chain signature. 131 137 IPR019825 -
Seca8g00190 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Seca8g00190 663 PANTHER - 53 620 - -
Seca8g00190 663 SUPERFAMILY Protein kinase-like (PK-like) 327 632 IPR011009 -
Seca8g00190 663 Pfam Legume lectin domain 25 248 IPR001220 GO:0030246
Seca8g00190 663 FunFam L-type lectin-domain containing receptor kinase VIII.1 420 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00190 Seca-Chr8 2424665 2426656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00190 22 653 Receptor kinase-like Gene Family AT5G55830 59.574 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca8g00190 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00190 - - adu:107496163 912.138