Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00185 ATGAAAAAAGGAAAAGACATAAATATTGAGAAAGACGGAGGGTTGTGTGATAACTTAAATGTTGGTCATGCTCAACTAGTGAACCGAGATGGAAATTTTAAGAATACTCTACACGGACTCATTGTTTTTAGTGAAGATGAAGCATATAACTTGTATAATGAATATGCATATAGGATTGGTTTTAGTATCCGCAGGGCCAAGCCTAGATATTATTCTGGAACACGAGATATTCAATTAAAGGATTTTTATTGCTCTTGTGAAGGATTTAAAGATGAAAAAGAACTCTTGTTGAAAGATGTTAAGTTCAAAAGGTTAGATATAAGGTGTGGCTGTCAAACAATGATTAGATTTAAAGTGGAAAGTGGACAATGGAAGGTAATTCATCATGTGACAGAGCATAATCATTATCTAGAACTTCAACATGAGAAACACTTGTTACGTTCCGCTCGAGAGATCACTCCTGAAAAGGCAAATTTCATCAATGATATGATTAACTCAGGCATAAGTGTTATTGATACTTTCAATTACATGTCACAAGAAGCCGGAGGCCCAGAGAAAGTTGGATTCACACAAAGAGATTGTTACAATCATGCAAATAAGCAAAAAATGATGATGATTGAAGCTGGAGATGCTCAAAGTCTAATAAACCTTTTTAAGGTTAAGAAAAAAGAAGATCCTATGTTTTTTTACACAGAACAAGTGGACCAAGAAGGTAGACTTACTAATTTCTTTTGGAGAGATGGGAGATCAAGAATTGATTATGATGCATTTGGAGATGTTGTGGTATTTGACACCACTTATCGCACAAACAAATACAATTTGATATGTGCACCTTTTGTAGGAGTAAACAATCATTGGCAGAATGTTATGTTTGGTTGTGCTTTTTTATTAGATGAGAAGATAGAGTCCTTTGTGTGGTTGTTCAAGTCTTTTTTAGATGTAATGGGTGATCAAGCTCCTAAAACCATTTTCACGGATCAAGATCAAGCCATGGCAAAGGCAATTGAAAAGGTATTCCCACACACTTCTCATCGTTTATGTTTATGGCACATAAGTAAAAATGTTGCTGATCATTTGGGTCCTTTGAAATCAAACAATGAGTTCATGGCAAAATTTAACAAGTGTTTGCAAGGTTGTGAATCAGAGAATGAATTTCAAATGACATGGGATGAAATGATTAACAAATTTGAATGCCAAGATCATAGTTGGTTGAGAAATTTGTACAAGTTGCGTCATAAGTGGTGCACAGGGTTGAATAAAGACACCTTTTCTGCTAATATTTTGTCTACTCAAAGGAGTGAGAGTACAAATAATGTTTTATCTAGCTTGGCAAGTGCAACCACCAGTCTTACAAATTTTGCACATGCTTTTGACAACTTATTGAAAAGGTGGTGTGCATGTGAGAGTAGTAGCCAATTTGATTCAGAAAGGGGTACTCCAAATATCATAGTTAAAGATAGTGAATTATTGAGACATGCTGCAGGGATATATACAATACCGATATTCAAAGTGTTTCAAAGTGAGTATGTCAATGTTCTTGCATCAACGTGGTCAATAATATCACAAACTGTGACAAGTCATAGTTATGAAGTGAAATCTCAAGGAAGTAGCAAAAGGGGAAGCAACCAAAAGGTACATGTCGTATATTTTGATGCTTCTACTATGAGTGTCTCATGTAGTTGCAAAAAGTTTGAATCAATGGGCATCCTTTGTTCTCATGCTTTGACAGTGCTTGTCCTTAATAATGTATCATTCATTCCTAATCATTATATCTTGCCTCGTTGGACAAAACAAGCTAAGGATAAGGGAAATGCATCAAGTTGTGGAGTATCTTGTGAAGACCTTTTGCCATGTGATCAAAATGAGAGTGGGACATTATTTTGCAATCGCATGATGCGTTATATGTACAACTTGATTTTGAAAGCAAAGGATAGCCAACAAGCAAAAGCAATATGTGAAAAAGGGTTTAAAAAAGTTTATGCAGATGTTGAAAAGGAATTGGGCAAGTTATGGCAACATGATAATACAAATGATTATGTAAATAATGATGTTGGTGATGAAGAAGTACCTCCACTGAAAAATCCTCCCACTATGCGACCAAAGGGTGTTACAAATGCTCGATTAAAAGGCCATTTTGAAAAACGAAAAGGCAAGCCTAATGCTTCTAAAAGAGGGGGAAAATCTGTTGTTGGATCCTTGCAACAACAATCAATAAATCATGCGTCCTCTATGGTCATCCCAATGAATCTATCTACATCTCATTATTTGCCTTATACAATGAATCAAAGGCCAAATCATATGGAAAGATGTATACAATTGCATACACAGCAGTTGTCATTGGACTTAGATAACTCTCATGTTCCGCTTTTGAGCATGTTACAACAAGATTTTGATGGTTTGGCCTCCTACAACCTAACTCAGGTTGTAAAGAAGGGTGATAGAAGATTGAAGACAGATTGA 2460 0.3557 MKKGKDINIEKDGGLCDNLNVGHAQLVNRDGNFKNTLHGLIVFSEDEAYNLYNEYAYRIGFSIRRAKPRYYSGTRDIQLKDFYCSCEGFKDEKELLLKDVKFKRLDIRCGCQTMIRFKVESGQWKVIHHVTEHNHYLELQHEKHLLRSAREITPEKANFINDMINSGISVIDTFNYMSQEAGGPEKVGFTQRDCYNHANKQKMMMIEAGDAQSLINLFKVKKKEDPMFFYTEQVDQEGRLTNFFWRDGRSRIDYDAFGDVVVFDTTYRTNKYNLICAPFVGVNNHWQNVMFGCAFLLDEKIESFVWLFKSFLDVMGDQAPKTIFTDQDQAMAKAIEKVFPHTSHRLCLWHISKNVADHLGPLKSNNEFMAKFNKCLQGCESENEFQMTWDEMINKFECQDHSWLRNLYKLRHKWCTGLNKDTFSANILSTQRSESTNNVLSSLASATTSLTNFAHAFDNLLKRWCACESSSQFDSERGTPNIIVKDSELLRHAAGIYTIPIFKVFQSEYVNVLASTWSIISQTVTSHSYEVKSQGSSKRGSNQKVHVVYFDASTMSVSCSCKKFESMGILCSHALTVLVLNNVSFIPNHYILPRWTKQAKDKGNASSCGVSCEDLLPCDQNESGTLFCNRMMRYMYNLILKAKDSQQAKAICEKGFKKVYADVEKELGKLWQHDNTNDYVNNDVGDEEVPPLKNPPTMRPKGVTNARLKGHFEKRKGKPNASKRGGKSVVGSLQQQSINHASSMVIPMNLSTSHYLPYTMNQRPNHMERCIQLHTQQLSLDLDNSHVPLLSMLQQDFDGLASYNLTQVVKKGDRRLKTD. 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00185 819 Pfam SWIM zinc finger 553 578 IPR007527 GO:0008270
Seca8g00185 819 MobiDBLite consensus disorder prediction 709 729 - -
Seca8g00185 819 Pfam MULE transposase domain 260 354 IPR018289 -
Seca8g00185 819 SMART 26again6 557 584 IPR006564 GO:0008270
Seca8g00185 819 ProSiteProfiles Zinc finger SWIM-type profile. 546 582 IPR007527 GO:0008270
Seca8g00185 819 Pfam FAR1 DNA-binding domain 51 137 IPR004330 -
Seca8g00185 819 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 663 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00185 Seca-Chr8 2370676 2373767 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g00185 MULE 1.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00185 - - csin:114268341 726.472