Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00153 ATGTCTAGAACATTAAGGAATCTCCCACTTTCTCCTAAAATCTTCTCCCTCACCTTGTTTCTCTCAATAAACTCTCTTTTCTTTTTATGTTGTTACTCCCTTGATGAACAAGGCCAAGCTCTTGTAGCATGGAAGAACAGTTTAAACAGTACTACAGATGCATTAGCATCTTGGAATCCTTCAAATCCAAGCCCATGCAACTGGTTTGGGGTGCACTGCAACTTACAAGGCCAGGTGGTGGAGATAAACCTGAAATCAGTGAGCTTGCAAGGCTCATTACCTTCAAATTTTCAACCTCTCAGGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACATCACAGGCAGGATTCCAAAAGAAATTGGAGAATATCAAGAGCTCACTGTCATTGATCTCAGTGACAATTTTCTCTTGGGAGAAATCCCAGAAGAAATTTGTAGGCTAAGCAAACTGGAAACTTTAGCTCTCCATACAAACTTTCTTGAAGGCAGTATTCCATCCAACATAGGAGATTTATCAAGTCTTGTGGAGTTGACATTCTATGACAATAAACTGAGTGGTGAAATTCCAAAGAGTATTGGCTCCTTAAGCAAGCTTCAAGTGTTCAGAGCAGGAGGGAATGCAAACCTTAAGGGTGAGCTTCCATGGGACATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGTCTTCCTTCTTCAATAGGGATGCTGAAAAATATTCAGACCATAGCCATTTACACAACTAAGTTGTCAGGATCTATCCCAGAAGAGATTGGGAATTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATTTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTCAGAGTCTACTTCTATGGCAAAACAACTTAGTGGGAGCAATCCCAGAAGAGATTGGAAGATGCACAGAGCTCACAGTCATAGACTTGTCAGAAAATCTTCTCACAGGTAGCATACCAACTAGTTTTGGACAGCTATCAAATCTCCAAGGGCTTCAGCTGAGTATTAATCAGCTGTCAGGTACTATACCTCCTGAAATTTCAAATTGCACTTCTCTGACTCAGCTGGAAGTTGACAACAATGCTATTTCTGGTGAGATTCCTCCTGTTATTGGCAACTTGAGAAGCTTGACACTTTTCTTTGCCTGGAAGAACAAGCTAACAGGAAAAATCCCAGATAGTCTTTCAGAGTGCCAAGATCTTCAGGCACTTGATCTGTCTTACAACAACTTAATTGGTCCAATTCCCAAACAACTATTTGGGTTGAGGAATCTCACTAAACTTCTGCTTCTTTCCAATGATTTGTCAGGCTTCATACCTCCTGATATAGGTAACTGCACAAGCCTCTACAGGTTGAGGCTAAATCAGAATAGGCTGGCAGGTACCATTCCATCTGAGATTACCAACTTGAAGAATTTGAATTTTTTGGACATGAGCAGCAATCATCTTGTAGGGGAGATTCCTCCAACACTATCCAGATGCCAAAATCTTGAGTTTCTGGACGTCCATTCAAATAGTCTCACTGGTTCAGTTCCAGATAATCTGCCAAAAAGCCTTCAGCTAATTGACCTGTCAGACAACAGGCTAACAGGTGCACTGAGTCATTCCATTGGTTCATTAACTGAATTAACCAAACTCAGCTTGGGAAAGAATCAACTCAGTGGAAGAATTCCAGCAGAGATCCTATCTTGCTCCAAGCTACAACTTTTAGACTTGGGAAGCAATAGTTTCTTTGGAGAAATTCCCAAGGAAGTTGGTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCACCTCAGTTCTCTGGTCTTAGAAAACTTGGAGTGCTTGATCTCTCACATAACAAGCTCTCAGGGCATTTAGATGCTCTTTCTAACCTTCAGAATCTTGTTTCCTTAAATGTCTCCTTCAATGACTTCTCTGGTGAATTGCCTAACACACCATTCTTCAGGAAACTCCCTCTCAGTGATCTCACTGCAAATAATGGTCTCTACATTTCTGGTGGTGCTGTAACTCCAGCTGACAGAATGGAAGCAAAAGGCCATGCCAGATTAGCTATGAAGATTATAATGACCATTCTCATGTGCACCAGTGCTGTACTAGTACTTCTCACAATCCATGTCTTGGTTCGTTCTCATATTGCTAACAAAGCACTCATGGGAAATGACAGTTGGGTGGTGAGTTTGTATCAAAAGTTTGAGTTTTCTATTGATGACATTGTCAGAAATTTGACATCTGCCAATGTGATTGGCACTGGAAGCTCTAGAGTTGTGTATAAGGTAACAATTCCAAATGGTCAAACACTAGCAGTTAAAAGGATGTGGTCATCAGCAGAGTCTGGAGCATTTAGTTCTGAAATTCAAACACTAGGTTCAATCAAACACAAGAATATCATCAAGCTTCTAGGTTGGGGATCCAGTAAGAATTTGAAGCTGCTGTTTTATAACTACCTCCCTAATGGAAGCCTGTGCTCATTACTTCATGGTTCAGGAAAGGAAAAAGCAGAATGGGAGACCAGATATGAAATCATGCTAGGCCTAGCTCAGGCACTTGCATATTTACACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCAATGAATGTGTTATTAGGTCCTGGCTATCATCCTTATCTTGCTGACTTTGGCCTGGCAAGAATTGCAAGTGAAAATGGTGATAATACTAATTCCAAGCCAATTCAAAGACCCCACCTTTCTGGTTCCTATGGATACATGGCTCCTGAACATGCATCAATGCAGCAGATCAGTGAGAAAAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTAACAGGAAGGCACCCATTAGACCCAACTCTGCCTGGGGGTGCACACTTGGCTCAGTGGGTTAGGAACCACTTAGCTAGCAAAGGAGACCCATCTGATATTCTTGACCCAAAGCTGAGAGGAAGGACTGACTCTACTATGCATGAAATGCTACAAACTCTAGCTGTGTCATTTCTATGTGTCAGTACCAAAGCTGAAGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTAGACCTGTTGAGGCCTCAATGACAGATCCTGATGCATTGAAGGGAGTTTTAACAGCAGATACTAAGAATGTAGTTTCACATGGATCTTCTAACTGTTCCTTTAATATCTCAAATGACTCAATGTGTTGA 3267 0.4157 MSRTLRNLPLSPKIFSLTLFLSINSLFFLCCYSLDEQGQALVAWKNSLNSTTDALASWNPSNPSPCNWFGVHCNLQGQVVEINLKSVSLQGSLPSNFQPLRSLKILVLSSTNITGRIPKEIGEYQELTVIDLSDNFLLGEIPEEICRLSKLETLALHTNFLEGSIPSNIGDLSSLVELTFYDNKLSGEIPKSIGSLSKLQVFRAGGNANLKGELPWDIGNCTNLVMLGLAETSISGSLPSSIGMLKNIQTIAIYTTKLSGSIPEEIGNCSELQNLYLYQNSISGSIPSQIGELSKLQSLLLWQNNLVGAIPEEIGRCTELTVIDLSENLLTGSIPTSFGQLSNLQGLQLSINQLSGTIPPEISNCTSLTQLEVDNNAISGEIPPVIGNLRSLTLFFAWKNKLTGKIPDSLSECQDLQALDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFIPPDIGNCTSLYRLRLNQNRLAGTIPSEITNLKNLNFLDMSSNHLVGEIPPTLSRCQNLEFLDVHSNSLTGSVPDNLPKSLQLIDLSDNRLTGALSHSIGSLTELTKLSLGKNQLSGRIPAEILSCSKLQLLDLGSNSFFGEIPKEVGQIPSLEIFLNLSCNQFSGEIPPQFSGLRKLGVLDLSHNKLSGHLDALSNLQNLVSLNVSFNDFSGELPNTPFFRKLPLSDLTANNGLYISGGAVTPADRMEAKGHARLAMKIIMTILMCTSAVLVLLTIHVLVRSHIANKALMGNDSWVVSLYQKFEFSIDDIVRNLTSANVIGTGSSRVVYKVTIPNGQTLAVKRMWSSAESGAFSSEIQTLGSIKHKNIIKLLGWGSSKNLKLLFYNYLPNGSLCSLLHGSGKEKAEWETRYEIMLGLAQALAYLHHDCVPSILHGDVKAMNVLLGPGYHPYLADFGLARIASENGDNTNSKPIQRPHLSGSYGYMAPEHASMQQISEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLAQWVRNHLASKGDPSDILDPKLRGRTDSTMHEMLQTLAVSFLCVSTKAEDRPTMKDTVAMLKEIRPVEASMTDPDALKGVLTADTKNVVSHGSSNCSFNISNDSMC. 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00153 1088 SMART serkin_6 768 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00153 1088 SMART LRR_typ_2 437 461 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 485 509 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 341 365 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 148 172 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 555 579 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 100 124 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 293 317 IPR003591 -
Seca8g00153 1088 SMART LRR_typ_2 628 651 IPR003591 -
Seca8g00153 1088 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Seca8g00153 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Seca8g00153 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 333 - -
Seca8g00153 1088 Pfam Protein kinase domain 771 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00153 1088 PANTHER RECEPTOR-LIKE PROTEIN 55 440 1047 - -
Seca8g00153 1088 SMART LRR_sd22_2 317 346 - -
Seca8g00153 1088 SMART LRR_sd22_2 628 653 - -
Seca8g00153 1088 SMART LRR_sd22_2 172 198 - -
Seca8g00153 1088 SMART LRR_sd22_2 531 557 - -
Seca8g00153 1088 SMART LRR_sd22_2 269 295 - -
Seca8g00153 1088 SMART LRR_sd22_2 485 514 - -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 609 693 IPR032675 -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 232 333 IPR032675 -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 334 431 IPR032675 -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 432 530 IPR032675 -
Seca8g00153 1088 Gene3D Transferase(Phosphotransferase) domain 1 842 1062 - -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 144 231 IPR032675 -
Seca8g00153 1088 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515
Seca8g00153 1088 Pfam Leucine rich repeat 610 664 IPR001611 GO:0005515
Seca8g00153 1088 PRINTS Leucine-rich repeat signature 628 641 - -
Seca8g00153 1088 PRINTS Leucine-rich repeat signature 534 547 - -
Seca8g00153 1088 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 694 - -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 36 143 IPR032675 -
Seca8g00153 1088 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Seca8g00153 1088 FunFam Leucine-rich receptor-like protein kinase family protein 336 608 - -
Seca8g00153 1088 FunFam Putative LRR receptor-like serine/threonine-protein kinase 753 841 - -
Seca8g00153 1088 FunFam Leucine-rich receptor-like protein kinase family protein 34 195 - -
Seca8g00153 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1060 - -
Seca8g00153 1088 Gene3D Phosphorylase Kinase; domain 1 736 841 - -
Seca8g00153 1088 SUPERFAMILY Protein kinase-like (PK-like) 755 1043 IPR011009 -
Seca8g00153 1088 Gene3D Ribonuclease Inhibitor 531 608 IPR032675 -
Seca8g00153 1088 ProSiteProfiles Protein kinase domain profile. 768 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00153 1088 SUPERFAMILY RNI-like 81 426 - -
Seca8g00153 1088 SUPERFAMILY L domain-like 406 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00153 Seca-Chr8 1973585 1977335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00153 31 1087 Receptor kinase-like Gene Family AT5G56040 65.920 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00153 Pkinase 6.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00153 - - gmx:100813139 1830.07