Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00150 ATGGATACTAAGTCAGTTGTGGATTTAATGGAATCTTCCTCTGAGGTTCATTTTTCTGGATTTCACATGGATGGCTTAGAGCAAAGAAAGGCTGGCATGGAGCAACCAACCACTTCAGAAACTGACATGTATAAACAACCCTTTGTCATAGGTGTTGCTGGGGGAGCAGCATCTGGCAAGACAGCCGTTTGTGATATGATTATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACCATAATTTGGCTGAGGAGGAACTTACAAGAGTACACGATTACAACTTTGACCATCCTGAAGCTTTTGATACTCAGCAATTGCTACGTGTCATGGACAAGTTGAAGCGTGGTCAAGCAGTAGATATTCCGAAGTATGACTTTAAGGGTTACAAGAAGGATGTGTTTCCAGCAAGAAGGGTAAACCCTGCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGCATTCATGAATATGAAGATATTTGTTGACACAGGTGCTAGTGATGCTATATCTTCATCTTTTTTCCCCACTTCTCTTGTTGGTTCCTATTTTATTAGTGGTTTCTACTATGCTGATATTCGTCTGGCAAGAAGGATTAAGCGTGATACTGCTGAGAATGCTCGCGATATTGGAGCAGTGCTTGATCAGTATTCTAAATTTGTGAAGCCAGCTTTTGATGACTTTATCCTTCCCACAAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTGGCTATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGCCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTTATTCAGTCTACTTTTCAGATAAGGGGCATGCACACCTTGATACGCGATTCTCAGACAACAAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGTCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAATCACTCCAACTGGTAAGCTTTTTTCCCCCAATGATAGTTTCTTTGGCTTGTATGCATCGTTCTTTACTCCTTTCACTACCAAGTGTTGTGCGGAGGATGTTCCCGTTGGGTATCTCTGGTTTCTTAAGTGCTGCCATATTGTTGCACAAAAGCGAGGGTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTATCATCAGGAGTGGGGAAAGCATGGAGAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGTTGATATATGAGAAGTTGCCTAATGATATCTCAGATAGGCATGTGTTACTGTTGGATCCTATCTTAGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTTCTAAGGAAGGGTGTACCGGAGTCCAACATTATTTTTCTCAATCTCATATCAGCACCTCAAGGTGTGCATGTGGTCTGCAAAAGATTTCCGAGAATAAAAATCGTGACATCTGAGATTGACATTGGTTTGAATGAAGATTTTCGTGTCATACCTGGGATGGGCGAGTTTGGGGACCGGTACTTTGGAACAGATGATGAGGACCAGCAGAGAACCAAGTCCAAGAGGCTCACGGGCGAGAGCTTTCCACAAAATTTCTTTTTTATCTCTCATGAGATGACTGAAATATATATTATGGAAAAGGATGAGGTGCCACTTGGCAAGAGGAAGGATCACTCGTTGCTCTATCCAAGAGTGATAACCTTCGTTAGGCTAATCACTGGACACGTGTTGCTTTTGCATGGGTTGGGTGGAACCTATTGGTATATTCCATCGAGAGATGAGCTTATCAAGAATGCCAAGTACATAGCTACCCCTGGCAAGGGCATCTTAGCAGCAGATGAGAGCACTGGCACCATTGGCAAGCGTCTAGCCAGCATCAATGTTGAGAACATTGAGGCCAACCGCCAAGCCCTTCGTGAGCTTCTCTTCACCTCTCCCAATGCCCTTCAATACCTCTCTGGTGTTATCCTCTTTGAGGAAACTCTTTACCAGAAGACCTCTGATGGGAAGCCTTTTGTTGAGGTCCTCCAAGAGAACAATGTCATCCCAGGCATCAAAGTGGACAAGGGTGTTGTTGAATTGGCTGGCACAAATGGTGAAACCACAACACAAGGCTTTGACTCTCTTGGAGCTCGATGCCAACAGTACTACAAGGCTGGTGCACGCTTTGCTAAGTGGCGTGCAGTCCTCAAAATTGGTCCCAGTGAGCCCTCTGAGTTATCCATCCAACAAAATGCACAGGGCTTGGCACGCTATGCCATCATTTGCCAGGAGAATGGCCTTGTCCCTATTGTTGAGCCTGAGATTTTAACTGATGGGCCTCATGACATCATCAAATGTGCTGCTGTTACTGAAACTGTGCTTGCTGCTGTTTACAAGGCACTCAATGATCAACATGTTCTTCTTGAAGGCACTCTTCTCAAACCCAACATGGTCACCCCTGGCTCTGATAGCCCAAAGGTACCACCTGAGGTGATTGCTGAGTACACAGTTACTGCACTACGCAGAACTGTCCCAGCTGCAGTACCAGGGATTGTGTTTCTGTCTGGTGGACAGAGTGAAGAAGAAGCAACACTCAACCTCAATGCAATGAACAAGCTGGAGGTGTTGAAGCCATGGACTCTGTCATTCTCATTTGGGCGAGCACTGCAGCAAAGCACACTCAAGACTTGGGCTGGAAAGAAAGAGAATGTTGCCAAAGCTCAAGAGGCATTTCTGGCAAGATGCAAGGCCAATTCTGAGGCTACTCTGGGGAAGTATGGTGGTGGAAGTGGGAGTGGGTTGGCTGCTGAGAGTTTGCATGTCAAGAACTACAAGTATTAG 2910 0.4399 MDTKSVVDLMESSSEVHFSGFHMDGLEQRKAGMEQPTTSETDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLAEEELTRVHDYNFDHPEAFDTQQLLRVMDKLKRGQAVDIPKYDFKGYKKDVFPARRVNPADVIILEGILVFHDPRVRAFMNMKIFVDTGASDAISSSFFPTSLVGSYFISGFYYADIRLARRIKRDTAENARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGKLFSPNDSFFGLYASFFTPFTTKCCAEDVPVGYLWFLKCCHIVAQKRGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDEDQQRTKSKRLTGESFPQNFFFISHEMTEIYIMEKDEVPLGKRKDHSLLYPRVITFVRLITGHVLLLHGLGGTYWYIPSRDELIKNAKYIATPGKGILAADESTGTIGKRLASINVENIEANRQALRELLFTSPNALQYLSGVILFEETLYQKTSDGKPFVEVLQENNVIPGIKVDKGVVELAGTNGETTTQGFDSLGARCQQYYKAGARFAKWRAVLKIGPSEPSELSIQQNAQGLARYAIICQENGLVPIVEPEILTDGPHDIIKCAAVTETVLAAVYKALNDQHVLLEGTLLKPNMVTPGSDSPKVPPEVIAEYTVTALRRTVPAAVPGIVFLSGGQSEEEATLNLNAMNKLEVLKPWTLSFSFGRALQQSTLKTWAGKKENVAKAQEAFLARCKANSEATLGKYGGGSGSGLAAESLHVKNYKY. 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00150 969 Pfam Phosphoribulokinase / Uridine kinase family 49 176 IPR006083 GO:0005524|GO:0016301
Seca8g00150 969 Pfam Phosphoribulokinase / Uridine kinase family 203 260 IPR006083 GO:0005524|GO:0016301
Seca8g00150 969 CDD PRTases_typeI 397 512 IPR000836 -
Seca8g00150 969 Gene3D - 43 275 IPR027417 -
Seca8g00150 969 CDD FBP_aldolase_I_a 621 949 - -
Seca8g00150 969 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 829 839 IPR029768 -
Seca8g00150 969 FunFam Probable uracil phosphoribosyltransferase 379 539 - -
Seca8g00150 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 265 IPR027417 -
Seca8g00150 969 CDD UMPK 49 272 IPR000764 -
Seca8g00150 969 Gene3D - 379 539 IPR029057 -
Seca8g00150 969 Gene3D - 276 351 IPR029057 -
Seca8g00150 969 SUPERFAMILY PRTase-like 275 540 IPR029057 -
Seca8g00150 969 Coils Coil 650 670 - -
Seca8g00150 969 Gene3D Aldolase class I 613 969 IPR013785 -
Seca8g00150 969 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 621 969 IPR000741 GO:0004332|GO:0006096
Seca8g00150 969 PRINTS Uridine kinase signature 77 88 - -
Seca8g00150 969 PRINTS Uridine kinase signature 47 64 - -
Seca8g00150 969 PRINTS Uridine kinase signature 122 137 - -
Seca8g00150 969 NCBIfam fructose-bisphosphate aldolase class I 624 945 - -
Seca8g00150 969 Pfam Fructose-bisphosphate aldolase class-I 623 969 IPR000741 GO:0004332|GO:0006096
Seca8g00150 969 SUPERFAMILY Aldolase 618 969 - -
Seca8g00150 969 FunFam Fructose-bisphosphate aldolase 614 969 - -
Seca8g00150 969 Pfam Uracil phosphoribosyltransferase 387 539 - -
Seca8g00150 969 Pfam Uracil phosphoribosyltransferase 290 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00150 Seca-Chr8 1914285 1923652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00150 1 542 PRT Gene Family AT4G26510 72.527 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00150 K01623 K00876 gmx:100798205 864.374