Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00141 ATGCTCCTCGCCGGCGCCGGCGGGACACTCCGTTTCTCCTCCGAAGACTGCTCCATTTCCGGCAGGTTTTTCCGGCCTCCGATTGTAGATTCCGGCAACCGGTGTAGCACTTCGATCCGAGCTTTCACTGCGACGGCGTCGGCGATCGATTCGCGGCGGCCGGCGAGCCTGTACGAGGTGCTACGGATCAAGCAGAACGCGTCGGCGGTGGAAATCAAGTCGGCATACCGGAGCCTTGCGAAGGTTTACCACCCTGATTCGGCGGTCCGGCGATCGGAATGCGACGAAAGGGACTTCATCGAGATCCATGACGCGTACGAGACACTGTCGAATCCGTCGACCAGAGCGCTCTATGATCTCTCGTTGATGGCCGCGACGCACAGTGGGAGGAACTCGTTCTCGTCTTCGGTGGCTCCGAATGACTATTCCGGATTCTACACGACCCGGAGATGGGAAACGGATCAATGCTGGTAG 474 0.5949 MLLAGAGGTLRFSSEDCSISGRFFRPPIVDSGNRCSTSIRAFTATASAIDSRRPASLYEVLRIKQNASAVEIKSAYRSLAKVYHPDSAVRRSECDERDFIEIHDAYETLSNPSTRALYDLSLMAATHSGRNSFSSSVAPNDYSGFYTTRRWETDQCW. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00141 157 ProSitePatterns Nt-dnaJ domain signature. 99 118 IPR018253 -
Seca8g00141 157 ProSiteProfiles dnaJ domain profile. 56 122 IPR001623 -
Seca8g00141 157 SUPERFAMILY Chaperone J-domain 56 129 IPR036869 -
Seca8g00141 157 SMART dnaj_3 55 114 IPR001623 -
Seca8g00141 157 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 32 157 - -
Seca8g00141 157 PRINTS DnaJ domain signature 76 91 IPR001623 -
Seca8g00141 157 PRINTS DnaJ domain signature 58 76 IPR001623 -
Seca8g00141 157 PRINTS DnaJ domain signature 94 114 IPR001623 -
Seca8g00141 157 CDD DnaJ 58 111 IPR001623 -
Seca8g00141 157 Gene3D DnaJ domain 43 140 IPR036869 -
Seca8g00141 157 Pfam DnaJ domain 57 119 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00141 Seca-Chr8 1731615 1732088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00141 58 119 C2H2 Transcription Factor Family AT1G74250 43.939 3.55e-08 49.7