Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00120 ATGTCTTCTTCTTCTTCTTCTCCTTCTTCGTCATCTCATGATCATCATCATGATGCTGCATCCAATGTTGCTCCTCCTAGTCCTACCACAAGGAGGAGGAATAACACTGATTTTGAAGGCCCTTCTTCCTCTCGTCAACGTGCTATGAATGAGGTCTGGCCTGAACCTGTTGTGGAATTATTAGCCACCCAAGTTGCTATCCATGCTGCTCATTTCCATGGTCCTCTTGCTGCTGCTTCTGCACTTGCCATTGTTTTTCAGGTTTGTTCAACATGGCGAGAAGTGTCACACTCTGAACTGCTTTGGCAGCGGCTCACCAGACAGATCTGGCGCGTGACACATCGACTGAGGGACACGTGGCATCTGGAGTATATCTTCTGGCATCGAACGGCCAGGAACTTCAGCACTGGGAGACACTCATTTGTGGTGCCTGATTTTGATCCTTCAGACACGCGCGGAGATCACCACCACCTCCAAACACTTATTTGCAGATGCCTCACACTCTCCGACACTCACCTTGCTTGTGGTTTTGTGGATGGCACTGTTCGTTTATTTGACTTGGAGACTAACCTCCATGTTAGCACCTTTTGGTCCAGCCATGGTCATCTCTTTGGCCCATTCTCACTTGCTGTATCCGGCATTGTTGTTACCAACTCAGTTCTCACCTTTGCTAGACTGGATGGTGACATCTATGTGGCAATCATAAATGGGCCTAACACAGCCCGTCGGGCTCTCCCTGGGGACGTGGTAAATAACGGCGTGTTGGTGGAATTCGCGGGCTCCAGTAGGTGGTGGGTGGGCCTGTTCGCGGGCCATGCAGGTGGGTCTTTTCAGATATGGGATGCGCATACAGAACAGCGCGTGTTTGTTGGAGGTTCGTTGACTGACCCTGAATCTGTCCTTGGCTGGCACATGTTGACTGAGTTAACTGAACCCGTGGGCCGAATCCGGGTCACAGATCAGGAGTTTGTTGTAGCGTGCACAAGTTCAAGGCTGGTTTGTTTTGAATTGAATAACCCGGAGGCTTTGTTATGTGATGTAGGGTCGAGGGCTGGGTTTGTGGTAAGTTCGTTAGACGTAAGCCATGAGAATTTTGTAGTAGTGGAAAGGAATGGTGTGGGAACAGTGCGGCGCGTGAACACATTTGAGCGCGTGAGCAGGTTTAGGATGAGGGGTTCATGGTTGAGGGGTTTGTTGGGGTGCATGAACCTTGGGTATGTTGTAACTTATTCTGGTGGAGGAGGTTTGTTGAGAGTGTGGGACATACACCACCCAAATGGAAGATTGTGTGTCACACTTGCAATTAGAGCAGGGGAGGGACAGGAACAACAGGTACAGGGACAAGCAAATAGCTTGGTGGCTAATCAAACACATGTGGCTATCTCCTCTAATGACACTTCCATACACTTATTGAATTTTAGTGTACAATAG 1431 0.492 MSSSSSSPSSSSHDHHHDAASNVAPPSPTTRRRNNTDFEGPSSSRQRAMNEVWPEPVVELLATQVAIHAAHFHGPLAAASALAIVFQVCSTWREVSHSELLWQRLTRQIWRVTHRLRDTWHLEYIFWHRTARNFSTGRHSFVVPDFDPSDTRGDHHHLQTLICRCLTLSDTHLACGFVDGTVRLFDLETNLHVSTFWSSHGHLFGPFSLAVSGIVVTNSVLTFARLDGDIYVAIINGPNTARRALPGDVVNNGVLVEFAGSSRWWVGLFAGHAGGSFQIWDAHTEQRVFVGGSLTDPESVLGWHMLTELTEPVGRIRVTDQEFVVACTSSRLVCFELNNPEALLCDVGSRAGFVVSSLDVSHENFVVVERNGVGTVRRVNTFERVSRFRMRGSWLRGLLGCMNLGYVVTYSGGGGLLRVWDIHHPNGRLCVTLAIRAGEGQEQQVQGQANSLVANQTHVAISSNDTSIHLLNFSVQ. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00120 476 Gene3D - 155 476 IPR015943 GO:0005515
Seca8g00120 476 PANTHER WD40 REPEAT PROTEIN 12, 37 24 430 - -
Seca8g00120 476 MobiDBLite consensus disorder prediction 23 49 - -
Seca8g00120 476 MobiDBLite consensus disorder prediction 1 49 - -
Seca8g00120 476 SUPERFAMILY WD40 repeat-like 163 473 IPR036322 GO:0005515
Seca8g00120 476 SUPERFAMILY F-box domain 82 135 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00120 Seca-Chr8 1481031 1485025 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Seca8g00120 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00120 - - lja:Lj2g3v3337320.1 615.92