Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00118 ATGGAAGCAAACAAAGAGGAAGCACTTAAAGCAATAGAGAATGCAGAGAAGAGATTTTCTCAGAGAGACTTCGCAGGTGCAAAAAACTATGCTGTAAAGGCTAAAACGCTTTGTCCGGAATTAGAGGGTTTATCTCAAATGGTGGCCACATTTGAAGTTTATATTGCTTCTGAGGTCACACATAATGGTGAACTGGATTATTATTCTATTCTTGGATTAAAACCTTCTGCAGATAAAGAGGCTGTCAAGAGACAGTACAAGAAGATGGCAGTTTTGCTTCATCCAGACAAGAATAAATGTGTGGGAGCTGATGGGGCATTTAAGCTTGTTTCTGAGGCATGGACTTGGCTATCAGATAGTACTATGCGAAGTTCTTACGATCTCAAGAGAAATGGACAGTCTGGCGGGATTAATCACACAAATTTGTCTTCTGTCCATGCTACAGGGGCTACAGTTTATAACAAATGTTCCAATTTGACAACCTCTCGTAGCGGTCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTCCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCCTGTAAGAACTGTCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCAGCCCCAGCAAATGGTTCATTTCCATATTGTCCTTGGTCATATGTGCCAGGAAATGGGTATGGAAGTCATTCATTTGATGGGGTTACATATGTTCCAACTAATGCCGCCTATTTCAATGGAAATGGGGTCACGGGATACCATTCTGGACATGGACATGGACATGGATATGAGTATGTTTCAAATGCTTCATTCCAGTGGGGCTCTGCTGGACTTATCCATCAAAATGGATCAACGACCTTACCAGCTGATTCTGTTTATCAGGCCAATGGAAATGTGAATGCGAAGAGGGGGAGACCTAAATTAAAATCAGGACCTGATGGGAGGCATCATGTGGCAGAGACTGTGGCCAATATAAATTCAGATGTATCATTCTCCTGTAACGAACCACAGGAAGTTAAGGCAAGTAGACCTGACAAGAAACGGAAAGTTGTGGCAGGAGCCAATTTCAGAAATGGCTATGAAGAAAAGGGGTCAAAATGTCCCTCAGAAGCAATGGTGTCTAATGGAAATGATGGTGTTGGTCATGGCCAGAAGCTTTCCTGCACAAATGAAGTTCAAACCAAACAGTGTTTCATGCCACCGCCATTTGACGCGAGGAAACTCTTGATTGAGAAAGCCAGGACAGAAATTAGGAAGAAACTGGAAGAGATGAAGTTGTCATCTGAAGCTGCTGCAGCTGCAACTCTGAATGAGAGAGAAAAAGCACAAGCTGATGTTGGTCATGTCAAAAGAGAGACATGTAGAAGAGCAGTGCTGAATGTTTCTGGTCTTCAATCAGAGAATGGGAAAGCTGGTCCAGTCTCAATAACTGTCCCAGATCCTGACTTTCATGACTTTGATAAAGATAGGGCAGAGGAATGCTTCAAGCCAAAGCAAATATGGGCCTTATATGATGAGGAAGATGGAATGCCGCGGTTGTATTGTCTGATCCGTGAGGTTATATCTGTCAGTCCATTTAAGATTCATATCAGTTACTTGAATTCCAAAACTGATAGTGAGTTTGGCTTAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTTAGGAAATTTCAGGGCTTGGAATTCTGATGTTGTTGACCAAGTTAACATATTTTCTCATGTTCTAAGCCAGGAGAAGGCCGGTCGAGGTGGTTGTGTTCGCATATATCCAAGAAGTGGAGATATCTGGGCTGTTTATCGAAATTGGTCACCAGAATGGAACAGATCTACACCAGACAAAGTGAGGCATCAGTATGAAATGGTGGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTACTCCCCTTATTAAGTTGGCTGGATTTAAAACAGTATACACAAGGAATACAGACAAAAGTGCCATAAAATGGATACCAAGAAGAGAAATGTTACGCTTTTCACACCAAGTGCCTTCTTGGTTGCTGAAAGAGGAGGCAAGCAATTTGCCTGAACGGTGTTGGGACCTTGATCCAGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTGCTACAGAAGCAAATGCTTTGTAG 2139 0.4259 MEANKEEALKAIENAEKRFSQRDFAGAKNYAVKAKTLCPELEGLSQMVATFEVYIASEVTHNGELDYYSILGLKPSADKEAVKRQYKKMAVLLHPDKNKCVGADGAFKLVSEAWTWLSDSTMRSSYDLKRNGQSGGINHTNLSSVHATGATVYNKCSNLTTSRSGLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVPGNGYGSHSFDGVTYVPTNAAYFNGNGVTGYHSGHGHGHGYEYVSNASFQWGSAGLIHQNGSTTLPADSVYQANGNVNAKRGRPKLKSGPDGRHHVAETVANINSDVSFSCNEPQEVKASRPDKKRKVVAGANFRNGYEEKGSKCPSEAMVSNGNDGVGHGQKLSCTNEVQTKQCFMPPPFDARKLLIEKARTEIRKKLEEMKLSSEAAAAATLNEREKAQADVGHVKRETCRRAVLNVSGLQSENGKAGPVSITVPDPDFHDFDKDRAEECFKPKQIWALYDEEDGMPRLYCLIREVISVSPFKIHISYLNSKTDSEFGLVNWLDSGFTKSLGNFRAWNSDVVDQVNIFSHVLSQEKAGRGGCVRIYPRSGDIWAVYRNWSPEWNRSTPDKVRHQYEMVEVLDDYSEELGVCVTPLIKLAGFKTVYTRNTDKSAIKWIPRREMLRFSHQVPSWLLKEEASNLPERCWDLDPAATPDELLHAAATEANAL. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00118 712 SUPERFAMILY Chaperone J-domain 58 131 IPR036869 -
Seca8g00118 712 Pfam Domain of unknown function (DUF3444) 475 681 IPR024593 -
Seca8g00118 712 Gene3D DnaJ domain 55 148 IPR036869 -
Seca8g00118 712 PANTHER BNAC03G44070D PROTEIN 1 698 - -
Seca8g00118 712 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Seca8g00118 712 Pfam DnaJ domain 66 127 IPR001623 -
Seca8g00118 712 CDD DnaJ 66 119 IPR001623 -
Seca8g00118 712 PRINTS DnaJ domain signature 86 101 IPR001623 -
Seca8g00118 712 PRINTS DnaJ domain signature 102 122 IPR001623 -
Seca8g00118 712 PRINTS DnaJ domain signature 68 86 IPR001623 -
Seca8g00118 712 Coils Coil 410 430 - -
Seca8g00118 712 SMART dnaj_3 65 122 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00118 Seca-Chr8 1455207 1459111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00118 4 312 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.659 1.25e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00118 - - gmx:100792639 1228