Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00117 ATGGAGTACCTTTTTGGCTTTGCGTCTTCCATTTCAAGAGACTTGGTATGTGGAGCAGTAGATCAATTAAGATACCCTTGCTGCTTCAATAATTTTGTTGAAGACCTTGCAAAAGAAAAGGCCAATTTGGTCACAACAAGAGATAGTGTCCAAGACCGTGTTGCACATGCCAAGAAACAAACTAGAAAGACCGCTCTAGTTGTTGATAAGTGGTTGAATGATGCTAACACTGACATAGACAAAGTTAATAAGTTACTAGAAAAGGCAACAACAAAAGGAAAAAATAGTTCTTGTCTTGTACACTGTCCAAATTGGATTTGGAGATACAATCTGGGAAGGAAGTTGGCAAAGAAGAAATGTGACATTAAAACGTGCATTCAAGAAGGTAGACAGTATATACAACTTGAATACCCTGCTTCACTTAGAGGCTATTTTTCTTCTGAAAAATGTTGGGAATTTGATAGCAGAAAATCTGCTTGTGAGGAGCTTATGAATGCATTGAAAGATGATGAGGTTACCATGATTGGATTGTATGGAATGGGGGGTTGTGGGAAAACAATGTTGGCAATGGAAGTAATGAAGAGAGCAAGTCATCTCTTTGAACAAGTGCTTTTTGTGCCTGTCCCTAATAATGCTGAAGTGCAGAGGATCCAAGAAAAAATTGCAAGCTCTCTTGAATTTGAATTCCAAGAAAAACATGAAATGGATAGATCCCAACGCTTGTGCATGAGGTTGACTCAAGAAGATAGGATCCTTGTGATTCTGGATGATGTGTGGGAAATGCTTGATTTTGATGCCATAGGGATTCCTTCTAAGGAACACCATAAAGGTTGCAAGGTTCTTATTACCACTCGATCTGAAACCATGTGTGTTTCCATGAACTGCCAAAAAATGATTCACCTATCAACCTTAACCAATGATGAAACGTGGGAAATTTTCCAAAAGCATGCACTCATATCAGAGGGCACTTCCTTTAGTGTAAAGCATTTGGCAAGAGAAATTTCTAATGAATGTAAAGGACTTCCTGTTGCCATTGTAGCTGTAGCTAGCAGTTTGAAAGGCAAGGCTGAGGTGGAATGGAAGGTTGCATTGAATAGATTGAGAAGTTCCAAACCAGTGAATATTGAAAAAGGTTTGCAAAATCCTTACAAGTGCTTGCAGTTAAGCTATGATAATTTGGACATGGAAGAAGCCAAGGCACTTTTCTTCTTGTGTTCTGCATTTCCTGAAGATTATGAAATTCCAGTTGAAATTTTAACCAGATCTGCAATAGGGCTAGGCATAGTTGGAGAAGTTCAATCATATGAAGAGGCAAGGAATGAAGTCAGTGCAGCTCAAAATAAGCTCATAAGTTGTTGCTTGTTGTTAGATGTTGATGACAGAAAGTGTGTCAAAATGCATGACTTAGTTCGCAATGTAGCCCACTAG 1428 0.3873 MEYLFGFASSISRDLVCGAVDQLRYPCCFNNFVEDLAKEKANLVTTRDSVQDRVAHAKKQTRKTALVVDKWLNDANTDIDKVNKLLEKATTKGKNSSCLVHCPNWIWRYNLGRKLAKKKCDIKTCIQEGRQYIQLEYPASLRGYFSSEKCWEFDSRKSACEELMNALKDDEVTMIGLYGMGGCGKTMLAMEVMKRASHLFEQVLFVPVPNNAEVQRIQEKIASSLEFEFQEKHEMDRSQRLCMRLTQEDRILVILDDVWEMLDFDAIGIPSKEHHKGCKVLITTRSETMCVSMNCQKMIHLSTLTNDETWEIFQKHALISEGTSFSVKHLAREISNECKGLPVAIVAVASSLKGKAEVEWKVALNRLRSSKPVNIEKGLQNPYKCLQLSYDNLDMEEAKALFFLCSAFPEDYEIPVEILTRSAIGLGIVGEVQSYEEARNEVSAAQNKLISCCLLLDVDDRKCVKMHDLVRNVAH. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00117 475 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 28 475 - -
Seca8g00117 475 PRINTS Disease resistance protein signature 245 259 - -
Seca8g00117 475 PRINTS Disease resistance protein signature 174 189 - -
Seca8g00117 475 PRINTS Disease resistance protein signature 338 352 - -
Seca8g00117 475 Coils Coil 33 53 - -
Seca8g00117 475 Gene3D - 144 300 IPR027417 -
Seca8g00117 475 FunFam Probable disease resistance protein At1g61300 153 298 - -
Seca8g00117 475 Coils Coil 72 92 - -
Seca8g00117 475 Gene3D - 303 388 IPR042197 -
Seca8g00117 475 Gene3D - 389 475 IPR036388 -
Seca8g00117 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 403 IPR027417 -
Seca8g00117 475 Pfam NB-ARC domain 158 392 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00117 Seca-Chr8 1451274 1452701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00117 171 386 WRKY Transcription Factor Family AT5G45050 22.707 6.54e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00117 - - cam:101501248 759.214