Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00112 ATGTCCTCAGCTGGTGGGGATGATGATCTTGGTGCTAGCTTAATCCTCACAAGCAAGTACACCAGGATATGGCGTAGAACAAGCTTAAACATAAGTTTCCTCATCTCTTTGAAGAAGTCAACAACTGCCACTGCTCCACCATCACCACTTTCTTCAGTACCTTACACCTCATTGCCTCCTGCTAGAACCTCCTCTGCCAAATCTTCTGTTGCAATTGATATATGTTCTTCTCATGCTGAAGAAGAAGAAGATGTACAAGTAGAACAGCTCAATAGGATTGATGTTGCTCGAATTGTGAAGGAGCAGGACTTTGAATCGCTTCTTGAGATTGGTGGGGTTGACCGCGTTTGTGCTATTCTCCAGAGTCAACGTCAACACTCAGAGGTAATTGATTATAGGAACCTTGGTGTGTTGGGGAACCCTGTACCAGTTTATGGAACAAGCTTCTCCAGCTTTTTGTTGAATAGCTGGAAACAGAATCGTTACACAATTTCAATGCTGTTGATCTCAGCTGCATTCTCCTTTGCCACTGAGTTCAAGCAAGAGGGGCCCAAATATGGTTGGCATGATGGTGTTGCCATTGTTTCTGCTGTTCTTATGCTGATTGTGTTCTCTTCAATGACTAACTTTTGGCGTCAAAGACAAATGATGAAATTGGCTAAGAGAAGGGGCAAGTTGGAATTCACAGTTCAAAGAGATGGAGAGTGCACAAAGGTTGCCTTATCAGATATTGTGGTGGGTGACATGGTGTGTTTGAGGAAGGGTGATGAGGTTCCAGCAGATGGTTTGCTTGTAAGTGGTGAGTCTGGTGACATCCTTGTGCTAGCTGAGGCAATGAAAAGCAAAATTGATTGTAAGAGGAACCCATTTCTTATGGCTGGTTCAAAGGTGATTGAGGGTAATGGACGGATGCTTGTAGCAGCATCAGTTGCATACAAAGATTGTAATAATCCTGAAAAGAGAGGCCTATTGGAGAGTCAAATTGAGAAGCCAATTTCTTACATTGACAAAGCAGCACTTTTTATCTCTACACTGGTTGCACTTGTGGTATTCATTCGCCTAATGTGTAAAAAGAATGTGGATAGTGGTGGGTTGCCAGAAATGAAGGGGAATGTCTCAGTTGGCTTAGTAATGGAAGTCCTTGAGAGAATCTTTTTGAGACCACAAGGAAGGATTTCCATTTTAACAGGTCTTGTAACTGTTGTAATACTATGTGTGCAACATGGGGTGCCACTTATGGTTACAATTTCTCTCAAATACCAGATTGATAAGGTAGTGTCAGACCAAGAGGCAGTTCTTAATGATTTATCAGCTTGTACTACAATGGGGTTGGTAACTGTCATCTGCATTGATGTATCAGGTGGGCTTATATCTAAACCAATGGAGGTTAGCAGAATCTGGATGGGGGAGACAGATATTAGCAAGGTTGAGGGATCAAAATCAGATCCAGGTGTACTTATGCTTAAAGAAGGAGTTGGTTTGTCAGTTCTTGCACCTGAACTTTCACTTTCTCCTATGTCCAATTCACTTGTTTCTTGGGCAGAAACAACATGGGAAATGAACATAAAATCTCTCACACAAGAATATGACATTCTTAAGCACAGAAAACTGAATTCTGACAAAGAAGGAAGGGGAGTTTTGGTGAGAAAATTTGAGGGCAATGGACAAGTTCTGCACTTGCACTGGAGTGGGACTGCATCCACAATATTGGATATGTGTTCTCAATACTATGATAGTAAAGGAGAATGCCATGCCATGAAAAACCAGAAAATCAAATTTGGGCAGGTGATTAAAGACATGGAGGACAGTGGCCTTGAACCAATTGCATTTGCTTATAGACAAACACATGAAGAAGAACTTGAGCAAGATGAATTGATCTTGTTAGGACTAATAGGTCTCAAATACACATGTCAGGAACCAACAAAGTTAGCTTTGGAAAACCTCAGAAATACTGGAATACAGATCAAGTTGGTCTCAGAGGATGACATCATGTTAGTGAAAGACATAGCTTCTGAACTGGGAATAGATGTGACAGTAGATGGTATTATGCTTGAAGGAAAAGAATTTCAAGATTTGAATGGCAATGTTAGATCAGACAAAGTGGATCCAGCCCTTGTAATGGGAAGTTTCCGTCCTGAAGACAAGCTTCTCATGGTACAATGCTTGCAAGACAAAGGTCATGTGGTTGCATTTGTTGGAAGAAGGTTGAGCCATACTTCAGTTCTAAAGGTAGCTGATGTAGGGATAGTTCATAACTCTAAGAGCAGAATAGTGGATAGAGAGAGTGCTGGTATATCTATCAAGTGTTTCAGTGCATTGAAACCAATTGTGAGGGCTGGAAGAAGTAACTATCACAATATTCAGAAGTTCATTCAACTTCAGCTGACATTTACCATATCAGGGTCACTCATAACCTTGATTACAACAATATTCACTGGAGAATCCCCTCTAACAGCAATCCAATTGATTTGGGTGAATGTACTAATGTGCCTTCTGGGTAGCCTAATGATGGTAATGGAGTTAAGTAGCCAGGAAGAGCTTGACAAGAAACCATCAGACAGGAATCAGCCAATCACAACCAAGGTAACCTGGAAGAACATAGTTATTCAGGTTTTGTGTCAGGCTTTTGTATGCATGATACTTGAATTTTGGGGACATGTTCCTGACAGTGACAAGAAAATCAGGAAAACCATGATCTTCAACACATTCCTATTATGTCAGCTCTTCAAACTGCTCAACACCATGCATTTGTTGAGTAAGGAAGTGTTCAAGATTGTTGTTAAGAGCTGCTGCTGTTTCTTGGTGGCTTTAGGTGGTTGTTTTATTATGCAGGTGTTGGTGATTGAGTATGCAAAAGGCCTAGCAGATTGCATGAGGCTGAATGCTACTCAATGGGCTATCTGTGTCCTGTTTGGTGCTCTTCCATGGGTATTTGAATGGGCCTTGAAGATTCTTCCACCTATTCTCAGCACCAATTGTGCTTCAGAATCAAATACTTCAACCACCCTACAAAATTGGTTCTATCATTCTTGGAGTTTTCCATCTATGATGCTCCTTTTGTTCCCTGTAGGACTAATATAA 3081 0.4109 MSSAGGDDDLGASLILTSKYTRIWRRTSLNISFLISLKKSTTATAPPSPLSSVPYTSLPPARTSSAKSSVAIDICSSHAEEEEDVQVEQLNRIDVARIVKEQDFESLLEIGGVDRVCAILQSQRQHSEVIDYRNLGVLGNPVPVYGTSFSSFLLNSWKQNRYTISMLLISAAFSFATEFKQEGPKYGWHDGVAIVSAVLMLIVFSSMTNFWRQRQMMKLAKRRGKLEFTVQRDGECTKVALSDIVVGDMVCLRKGDEVPADGLLVSGESGDILVLAEAMKSKIDCKRNPFLMAGSKVIEGNGRMLVAASVAYKDCNNPEKRGLLESQIEKPISYIDKAALFISTLVALVVFIRLMCKKNVDSGGLPEMKGNVSVGLVMEVLERIFLRPQGRISILTGLVTVVILCVQHGVPLMVTISLKYQIDKVVSDQEAVLNDLSACTTMGLVTVICIDVSGGLISKPMEVSRIWMGETDISKVEGSKSDPGVLMLKEGVGLSVLAPELSLSPMSNSLVSWAETTWEMNIKSLTQEYDILKHRKLNSDKEGRGVLVRKFEGNGQVLHLHWSGTASTILDMCSQYYDSKGECHAMKNQKIKFGQVIKDMEDSGLEPIAFAYRQTHEEELEQDELILLGLIGLKYTCQEPTKLALENLRNTGIQIKLVSEDDIMLVKDIASELGIDVTVDGIMLEGKEFQDLNGNVRSDKVDPALVMGSFRPEDKLLMVQCLQDKGHVVAFVGRRLSHTSVLKVADVGIVHNSKSRIVDRESAGISIKCFSALKPIVRAGRSNYHNIQKFIQLQLTFTISGSLITLITTIFTGESPLTAIQLIWVNVLMCLLGSLMMVMELSSQEELDKKPSDRNQPITTKVTWKNIVIQVLCQAFVCMILEFWGHVPDSDKKIRKTMIFNTFLLCQLFKLLNTMHLLSKEVFKIVVKSCCCFLVALGGCFIMQVLVIEYAKGLADCMRLNATQWAICVLFGALPWVFEWALKILPPILSTNCASESNTSTTLQNWFYHSWSFPSMMLLLFPVGLI. 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00112 1026 PANTHER CATION TRANSPORTING ATPASE 87 986 - -
Seca8g00112 1026 Gene3D - 771 989 - -
Seca8g00112 1026 Gene3D - 204 308 - -
Seca8g00112 1026 Gene3D - 309 461 - -
Seca8g00112 1026 Gene3D - 630 770 IPR023214 -
Seca8g00112 1026 MobiDBLite consensus disorder prediction 42 63 - -
Seca8g00112 1026 Gene3D - 462 629 IPR023299 GO:0000166
Seca8g00112 1026 SUPERFAMILY Calcium ATPase, transmembrane domain M 160 986 IPR023298 -
Seca8g00112 1026 Pfam E1-E2 ATPase 228 311 - -
Seca8g00112 1026 Pfam Cation transporting ATPase, C-terminus 815 984 IPR006068 -
Seca8g00112 1026 SUPERFAMILY HAD-like 447 834 IPR036412 -
Seca8g00112 1026 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 633 IPR023299 GO:0000166
Seca8g00112 1026 SUPERFAMILY Calcium ATPase, transduction domain A 228 308 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00112 Seca-Chr8 1394079 1397751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00112 60 990 Primary Pumps ATPases AT3G63380 33.435 1.45e-150 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00112 K01537 - gmx:102661547 1117.45