Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00111 ATGGCCACCTCTGCTATCCAGCAATCAGCATTCACTGGCCAGACTGCATTGAAGCAGGGAAATGAGCTTGTCCGGAAGATTGGTGGCTTTGGCAAAGGTCGCTTTACCATGCGTCGTACCGTGAAGAGTGCTCCTCAGAGCATTTGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCCTTCTCTGAGCAAATTCCATCATACCTGACTGGTGAATTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACCTTTGCCAGGAACCGTGAGCTTGAGGTAATTCACTGCAGATGGGCTATGCTTGGTGCACTGGGATGTACCTTCCCAGAAATCCTTGAAAAGAATGGTGTCAAGTTTGGTGAGGCAGTTTGGTTCAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTAGGCAACCCAAACCTGATTCATGCTCAGAGCATCCTTGCAATCTGGGCTTGTCAGGTTGTGCTCATGGGATTTGTTGAAGGTTACAGGGTTGGTGGAGGACCACTTGGTGAAGGACTAGACCCAATTTACCCTGGTGGTGCCTTTGACCCACTTGGTCTTGCTGATGACCCTGATGCATTTGCAGAGTTGAAGGTGAAGGAAATCAAGAATGGCCGATTGGCAATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGCAAGGGCCCTATTCAGAACCTTTTCGACCATGTTGCTGACCCTGTCGCCAACAATGCATGGGCATATGCCACTAACTTTGTCCCTGGACAATGA 798 0.495 MATSAIQQSAFTGQTALKQGNELVRKIGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLFDHVADPVANNAWAYATNFVPGQ. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00111 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 264 IPR001344 GO:0009765|GO:0016020
Seca8g00111 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Seca8g00111 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Seca8g00111 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Seca8g00111 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00111 Seca-Chr8 1390920 1392049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00111 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 87.170 8.60e-179 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00111 K08913 - gmx:100815789 526.939