Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00103 ATGGCTATGGTGCCTTCGCATTTCCATTCAATTAAATCTCTGTGTGGGCTCCAACAAAATTGGAGGTTGAGGGTGAAATTGGTTAGGGTGTGGAACATGGCTTCCATAGCTACTCCAAATGACCCATTTGCCACCCAAATGGTTTTGATTGATGAAGAGGGCGGAAGAATTGAGGCCACTGTACCCAAACAACATATGCCTAAGTTCTCTCACTCTCTCATTGAGGGACAGATATACAAGATCACTAATTTTGGAATCCTGCGAAACAACAGAAAGTTTAGAGAAGTTGTCCATGAGTTTAAGATCATATTCAATACCACTACCAGGCTCATTCCGTGCCAGAATGTTTCAATCTTATCATGTGGTTTTGCATTTGTGAAGAGTGATTTGATAAAGAAAACCAATGGTCGATCTGAATACCAAATTGATTTCATGGGCATCGTCACTGCCGTTTCAGAGGAAATCAACTTGAGCAAGGAGGGCAGGGAGACACGGCTCATGCTAATTGATTTAGTGGATGAGATGGGACAAATACGATTGACTTTATTTGGAGAAATGATTGATGTGGTTGCTGGATATCTTGGTCTCCCTCGATGTGGCTTGCCTGTTCTTATAATACAATTAGCCAAGGTTAATCTTTACAAAGGGGAAGTTGGGATCCAGAATGTGATGAACGCGTCAAAGGTTTATTGGAACCCGGATATGCCTGAGGTTGTAGAGTTTAGGAATGGGCGCCCTGCTTCAATGAAAGATGATTTCCTTAAATTATATCCAAAAAGGACTCTGGAACAACTGCACCAAATGGAAGAGGATGGCTTCTTTGTAATTATGGGCACAGTTGAACAGGTTATCGAAGATGGATTTTGGTGGTATATGGCATGTCCTTGCATGAAATCTGTATCCTATGATGATGGGGTTCCCTTTTGTGATGATTGTGGAGTCTATGTCATTGATCTGACTCCCAGGTTCAAGCTGAAAATTGAGGTCTCTGATGCAACAGACACTGCTCAGCTGATTTTGTTTGACTCAGAGTGCTATGCAATGCATCACAAGTCCTGTCGTGACATGTTAGCTGAGATTAAGCTGAAGTTTGCTCCTTCATTTACCAAAATTATTAATGAGGAAGCGACCAACTGTGTGAAGGACATAACCCCTGAATTGTCTTCTGTTGTGACTGAGATTCAAGTTAGCCCTTTTACAACTATTCCGTCGCCCAGTGATGGGGATGATGGTGGTAGTGTTAACAAGAGGGAGGCACAACAATCAACGGATGGACAATATGAGAGGAAGAAATGTCCCAGGCAGAAAGTGATCAAGGTTGAAAAGAATTGA 1332 0.4212 MAMVPSHFHSIKSLCGLQQNWRLRVKLVRVWNMASIATPNDPFATQMVLIDEEGGRIEATVPKQHMPKFSHSLIEGQIYKITNFGILRNNRKFREVVHEFKIIFNTTTRLIPCQNVSILSCGFAFVKSDLIKKTNGRSEYQIDFMGIVTAVSEEINLSKEGRETRLMLIDLVDEMGQIRLTLFGEMIDVVAGYLGLPRCGLPVLIIQLAKVNLYKGEVGIQNVMNASKVYWNPDMPEVVEFRNGRPASMKDDFLKLYPKRTLEQLHQMEEDGFFVIMGTVEQVIEDGFWWYMACPCMKSVSYDDGVPFCDDCGVYVIDLTPRFKLKIEVSDATDTAQLILFDSECYAMHHKSCRDMLAEIKLKFAPSFTKIINEEATNCVKDITPELSSVVTEIQVSPFTTIPSPSDGDDGGSVNKREAQQSTDGQYERKKCPRQKVIKVEKN. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00103 443 SUPERFAMILY Nucleic acid-binding proteins 134 244 IPR012340 -
Seca8g00103 443 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Seca8g00103 443 Gene3D - 8 115 IPR012340 -
Seca8g00103 443 CDD RPA1_DBD_A_like 22 109 - -
Seca8g00103 443 MobiDBLite consensus disorder prediction 399 433 - -
Seca8g00103 443 Gene3D - 250 390 IPR012340 -
Seca8g00103 443 PANTHER OS03G0429900 PROTEIN 9 390 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca8g00103 443 CDD RPA1_DBD_B_like 143 242 - -
Seca8g00103 443 Gene3D - 118 249 IPR012340 -
Seca8g00103 443 SUPERFAMILY Nucleic acid-binding proteins 261 360 IPR012340 -
Seca8g00103 443 Pfam Replication factor-A C terminal domain 273 374 IPR013955 -
Seca8g00103 443 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00103 Seca-Chr8 1339043 1341585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00103 4 341 Core DNA Replication Machinery Family AT2G06510 23.670 3.41e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00103 - - lja:Lj6g3v0884310.1 301.982