Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00102 ATGTATGCAACTTCTGCCATTTTCATTTCTGTGAATGCAATTTCTCCAACTATGGAGAATTGGGTTATCGATGTCCACCTAATAAGGATATGGACCATTCCTTACTGCTATGATCCTACACGCATCCTATCTGTTGAAATGGTCTATATGGACCGAATGGGTGATAAGATTCAAGCTTCAGTTAGCAGGGACCTACTGAAGCTGAAAAAGCTGGAAATGGATGAAGGTGGCTATTACTATATTAACAATGTTGTTGTTGTGCCAAATGATGGGAATGATAGACCAACGAGGCATGCATTCAGGATGGTCTTTGACAGGAGGACAAAGGTGGTCCCTGGTGAATGTCTTTTTTATACCAAGTTTGGCCTGTCTCCAGTTACTTGCAGTGACATTTTAAGGAATAAAAAGGACACACAACATCTTGTGGATAAGGTTGGGTTGCTAACTGTTGTGTCTTGCGAAAGGGAGCACACAAAGGATGATAGAAATGTGCTTGCGGTTTACTTGGAAATCACTGATCCCACGGGAAAGGTAGAGTGTGTTGTCTATGATGATATTGTGGAGGATCTTGTGGAATTCCTTCGAAAGCAAGGACCATGCACTCCTGTTATTGTGGTCCAATTTACCAGAATAGTCCCGGATGCACAAGTGCTTTTTGGTGATATTGGAATTGAGACAATTCAGCATATCTCCAGGATTCTGTTTAACCCAAATTTACCGGATGTGTTTGATATGCGAGAGTGGCTGGTATTGAGTGGGATATCTACTGAAGGTAAAATTCAGTATAGGAACATGGACATGTCATGTGTTATCCTAAGGGATGAATTCCTTTATTTTTACCACAAGAAAGACATAGGTCAATTAAACAAACAAGGGAAGGGAGGTTGCTTTGTAATTTGTGCAACCATCACTGGGTTTGCTGAAAATGAGGCCTGGTGGTACTCTGCATGTAGGCCCCATGCTTGCAGCTCTATGGGGAGCTCAATCTACACTTGTGATGGCAATTTTTCTGTTATCCCCAGGTATTCTCTAAAAATAGAGGTATCAGATGGGGCAGAATCAACTTACCTGCAGTTAGGTGATGAGGATGTGGAGGTGTTAGTGAATGTTAAATGTTCAGAACTGATTTCTAACTTGCAGCCTGCTCAATCCATAACATACCCAGAAGTGTTCAATTGCTTGCTTCGTAAGCGAATGTTGTTTGTGGTTGAAACAAAAAGCTTCTGTGATGTGGACGAGGGATGTATCAAAGTGTTGAGGGCATGTGCTGATAAAGAACTGCCAATATCAAGGATTGCAGGACTGTTAGGGGAGCGAGGCATGACTAGAAAACAAAACTTTGATGAGGGAAGCTCTTATGCAAGTGCCTTACCTGGAGATAATTTCACCCCTAAAGGGTCTGCCACCTTTAATTGTTCCTCTGCGGCAAGTGCTTCAGTCAATAATTTGACCAACCTAATTACCCCAGATCCTCAGACTGAGCCTCCTGTTGATAAGCACTGTGTTCACTTCACAACAAGAACTAATTAG 1530 0.4209 MYATSAIFISVNAISPTMENWVIDVHLIRIWTIPYCYDPTRILSVEMVYMDRMGDKIQASVSRDLLKLKKLEMDEGGYYYINNVVVVPNDGNDRPTRHAFRMVFDRRTKVVPGECLFYTKFGLSPVTCSDILRNKKDTQHLVDKVGLLTVVSCEREHTKDDRNVLAVYLEITDPTGKVECVVYDDIVEDLVEFLRKQGPCTPVIVVQFTRIVPDAQVLFGDIGIETIQHISRILFNPNLPDVFDMREWLVLSGISTEGKIQYRNMDMSCVILRDEFLYFYHKKDIGQLNKQGKGGCFVICATITGFAENEAWWYSACRPHACSSMGSSIYTCDGNFSVIPRYSLKIEVSDGAESTYLQLGDEDVEVLVNVKCSELISNLQPAQSITYPEVFNCLLRKRMLFVVETKSFCDVDEGCIKVLRACADKELPISRIAGLLGERGMTRKQNFDEGSSYASALPGDNFTPKGSATFNCSSAASASVNNLTNLITPDPQTEPPVDKHCVHFTTRTN. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00102 509 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Seca8g00102 509 Gene3D - 7 112 IPR012340 -
Seca8g00102 509 SUPERFAMILY Nucleic acid-binding proteins 288 406 IPR012340 -
Seca8g00102 509 SUPERFAMILY Nucleic acid-binding proteins 126 253 IPR012340 -
Seca8g00102 509 Pfam Domain of unknown function DUF223 47 112 IPR003871 -
Seca8g00102 509 CDD RPA1_DBD_A_like 25 110 - -
Seca8g00102 509 Gene3D - 120 255 IPR012340 -
Seca8g00102 509 Gene3D - 279 420 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00102 Seca-Chr8 1334101 1336818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00102 13 375 Core DNA Replication Machinery Family AT5G08020 20.573 3.90e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00102 - - tpra:123904946 213.772