Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00099 ATGTCTGTGAATCGAAGGCTTTGTGGTTCAAATGGCAGACTGCCACCAAGTTTGAAGTCTTGGAAGGCAAATGAACCTCTACATGGATCTAATTCTCCTAGGACATGTAGGAGAAAGCCTTTGCTGCTTTGGATTTTTGGAGTTTTTGCTATAGGGAGTGTTTGGTTTATCTTGAGTCTCAATAGTACGCAATTGATGAAAGAAGCAGCTTGTGAAGAGAGTGCAAGAGCCTTGCTACAACGTTACAATGTTAGTAGGAAGCAGCTTCATGCTTTGGTTTCCTTATTCTCTGGATCAGATCAGATCTTGTCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGTGGCATAGTCAGCACTCCACAGTTAACATGTCCAGAGAATCAGGAGTTACAAAAGGAGCATAGATGTATTGCAGACACTATAGAACCTATAGAACAATGCCCAATCCTCAATGATTTTGTCCAGACAAGGCTTGAATTATCATCCCCATTGAAAACATATGTAACATTGGCCTCACACTCTGCACTTGCATCCCATTTGGTTAATTTTTTGCTCTGTGGAAAGAATATTTTGCAGTCATGGGAAAGGAGGGTCTGTGCAAATCAGGATCACACGAGTTCGTCTAATTTAATTAAAGGATGCTTCTTTGTCCTTATTGGAATTATAATTATAATGTCCCACAAGTTGTCTGGCTTCTGTTTCCTATGGAGGAGTCAAAAGCAGAAGCTAGTTCAGGAGCATCCAGATGCTCAACAAAAGCGGATGCAACATTTTGTGCAGGGTCCTTCAAAGGGTGCTGGAAGGTGGAGGAAAAAGTTGCTAGTTATTTTTGTGTCACTTGGAATAGTTGGATCCGTTTGGTTATTCTGGCACCTAAATATGGACATTATGCAGAGAAGAGAAGAAATGCTTGCCAATATGTGTGATGAGCGAGCCCGTATGTTGCAAGATCAATTTAATGTGAGCATGAACCATGTTCATGCTTTGGCTATTCTTGTGTCTACCTTTCACCACGGTAAACATCCTTCTGCAATTGACCAGAAAATTTTCGGAGAATATACAGAGAGTACAGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTACGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAAAAGCAACATGGGTGGACAATTAAGAAAATGGAAACTGAAAATGAGGCATTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCAGCACCCATTCAAGACGAATATGCACCAGTTATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGAAAGGAGGATCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTGAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAAAACTAATCTTCCTCCAGATGCTACACCAGAACAGCGTTTTGAAGCCACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTAGTTGACAAGCTTCTTCACCAACTTTCCAGCAAGCAAACCATTGTTGTCAATGTTTATGACATAACTAATGCATCTGCACCTATCACAATGTATGGTACTGATGTTGCTGACACTGGCCTGCTACACATAAGCAGTCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGATTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCTGTGGGGGTATTTGTTATTACTTTGCTTCTGGGTCATATTTTTTATGCAGCAATAAATCGAATAGAAAAAGTGGAGGATGATTATAGTCAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGGACTCCAATGAATGGGGTGTTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGAGAACCAGATGGATTGTGCTCAAACTGCCCACAAGAGTGGTAAAGATCTTATATCAGTCATAAATGAGGTTCTTGATCAGGCCAAGATTGAGGCAGGCAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCACATGCTATTCTAGATGAAATTCTATCACTTTTCTCTGAAAAATCTAATGAAAAAGGACTTGAGTTGGCTGTTTATGCATCCAATCAAGTGCCTGAAGTTGTCATTGGCGATCCTAAACGGTTCCGGCAAATAATTACCAATCTTGTTGGCAATTCACTTAAGTTCACTCATGATAAAGGACATGTTTTTATCTCGGTTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGATGCAGTGCTGAGAGAAGGCTTGAACTTGGATCAGGACATGTCAGACAGAACATATAATACATTAAGTGGGTTTCCTGTTGGCAACAGATGGAAAAGCTGGGCAAATTTTAAGAAGTTAGATAGCACAAATTTGACGGATAAGCCTGAAATCATTCAACTACTAGTAACAGTTGAGGACACGGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGATAGTTCCCCATCCCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTCGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCATTTACCGGAAATTTCAGAAAAGGAGAAACCACATCTCTGGATGCAAAGTGGCAGAAGTGCAATCTTTTTGTCCCAGAGTTCCAAGGATTGAGAGCATTAGTTATAGATAGAAGAAAAATCCGAGCTGTGGTCACAAGATATCATCTGCAGAGGTTGGGGATGTCCGTGGATGTAACTTCCAGTCTCAAATCTGCATGCTCTTGTCTATCTGATACCTGCAATATGAGTATGTCAACGCAGTTTGCCATGATTCTTATAGACAAGGATTCTTGGGACAAGGAAAGTAGTATCTTATACACAATCAAGAAACACAGACAGAATGGCATCAACGGGGACCCAATAAGCTTTCCAAAGATTTTTCTCCTGGCCTCTCAATTTAGCCCCAGAGAACGTGATGAACTCAAGTCAGCTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGATTAGTGTTTTGATTCGTTGCTACAGAGAATCCCTTGGAACTGAAAAAAAGCAAATAAATAGGAAGAAAGAGTCCAAACTTGGAAATTTATTAATACACAGAAAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGGGTTGCCAAAGGTGTTCTGCAGAAATATGGGGCAATAGTTACCTGTGTGGAGGGTGGCAGGGCTGCTCTAAAAATGCTTAAGCCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCGACAAGGCAAATCCGCTGTATGGAAAGTGGTTTAAATGAGAAAATTGCATGTGGGCAAGCATCAGCGGAGATGTTTGGCAACATCTCTTATTGGCACATTCCAATACTAGCAATGACAGCTGATGTAACTCAGGCTTCAAGTGAAGAATGCAGAAAGTGTGGGATGGATGGCTATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTTTATGGCAGTGGCAGATTTCTTCAGTTCTGCATATGCCGAATTGGAGCTATGGTGTGTAGCAGATGAGCAGGCCACTGACTATGAGTTGCAAGCAGCCTTGGATTGGGCTTGTGGGAAAGGAGGTGCAGATTGTAGCAAAATTCAAGTGAACCAACCTTGCTATTTTCCAAACACATTAAAAGACCATGCTTCTTATGCCTTCAACAACTACTTTCAGAAATTCAAGCATAGTGGTGGTTCTTGTAACTTTAGAGGTGCTGCCATGACAACAGAGGAGGATCCTAGTAAGTATTGA 3957 0.4114 MSVNRRLCGSNGRLPPSLKSWKANEPLHGSNSPRTCRRKPLLLWIFGVFAIGSVWFILSLNSTQLMKEAACEESARALLQRYNVSRKQLHALVSLFSGSDQILSNCIDERRLQMLLSSGIVSTPQLTCPENQELQKEHRCIADTIEPIEQCPILNDFVQTRLELSSPLKTYVTLASHSALASHLVNFLLCGKNILQSWERRVCANQDHTSSSNLIKGCFFVLIGIIIIMSHKLSGFCFLWRSQKQKLVQEHPDAQQKRMQHFVQGPSKGAGRWRKKLLVIFVSLGIVGSVWLFWHLNMDIMQRREEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYKTNLPPDATPEQRFEATVGYLGASYDVPSLVDKLLHQLSSKQTIVVNVYDITNASAPITMYGTDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIEKVEDDYSQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDENQMDCAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVAFDPHAILDEILSLFSEKSNEKGLELAVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFISVHLANEVKNPLHIMDAVLREGLNLDQDMSDRTYNTLSGFPVGNRWKSWANFKKLDSTNLTDKPEIIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGNFRKGETTSLDAKWQKCNLFVPEFQGLRALVIDRRKIRAVVTRYHLQRLGMSVDVTSSLKSACSCLSDTCNMSMSTQFAMILIDKDSWDKESSILYTIKKHRQNGINGDPISFPKIFLLASQFSPRERDELKSAGIIDDILMKPLWISVLIRCYRESLGTEKKQINRKKESKLGNLLIHRKILVVDDNAVNRRVAKGVLQKYGAIVTCVEGGRAALKMLKPPHNFDACFMDLQMPEMDGFEATRQIRCMESGLNEKIACGQASAEMFGNISYWHIPILAMTADVTQASSEECRKCGMDGYVSKPFEEEQLFMAVADFFSSAYAELELWCVADEQATDYELQAALDWACGKGGADCSKIQVNQPCYFPNTLKDHASYAFNNYFQKFKHSGGSCNFRGAAMTTEEDPSKY. 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00099 1318 Gene3D - 1233 1318 - -
Seca8g00099 1318 PANTHER TWO-COMPONENT HISTIDINE KINASE 242 1220 - -
Seca8g00099 1318 FunFam Histidine kinase 4 602 693 - -
Seca8g00099 1318 Pfam His Kinase A (phospho-acceptor) domain 630 695 IPR003661 GO:0000155|GO:0007165
Seca8g00099 1318 CDD HisKA 630 691 IPR003661 GO:0000155|GO:0007165
Seca8g00099 1318 Gene3D CHASE domain 349 576 IPR042240 -
Seca8g00099 1318 FunFam Glucan endo-1,3-beta-glucosidase 4 1232 1318 - -
Seca8g00099 1318 Gene3D - 62 99 - -
Seca8g00099 1318 Gene3D - 296 348 - -
Seca8g00099 1318 Pfam X8 domain 1237 1309 IPR012946 -
Seca8g00099 1318 ProSiteProfiles Response regulatory domain profile. 938 1068 IPR001789 GO:0000160
Seca8g00099 1318 Pfam CHASE domain 348 542 IPR006189 -
Seca8g00099 1318 SMART REC_2 1090 1224 IPR001789 GO:0000160
Seca8g00099 1318 SMART CHASE_2 345 544 IPR006189 -
Seca8g00099 1318 Pfam Response regulator receiver domain 1092 1224 IPR001789 GO:0000160
Seca8g00099 1318 SUPERFAMILY CheY-like 1090 1227 IPR011006 -
Seca8g00099 1318 Gene3D - 933 1083 - -
Seca8g00099 1318 PRINTS Bacterial sensor protein C-terminal signature 898 911 IPR004358 GO:0016310|GO:0016772
Seca8g00099 1318 PRINTS Bacterial sensor protein C-terminal signature 874 892 IPR004358 GO:0016310|GO:0016772
Seca8g00099 1318 PRINTS Bacterial sensor protein C-terminal signature 857 867 IPR004358 GO:0016310|GO:0016772
Seca8g00099 1318 PRINTS Bacterial sensor protein C-terminal signature 839 853 IPR004358 GO:0016310|GO:0016772
Seca8g00099 1318 CDD REC_hyHK_CKI1_RcsC-like 1092 1224 - -
Seca8g00099 1318 SMART HisKA_10 630 695 IPR003661 GO:0000155|GO:0007165
Seca8g00099 1318 Gene3D - 1087 1232 - -
Seca8g00099 1318 SMART X8_cls 1237 1318 IPR012946 -
Seca8g00099 1318 ProSiteProfiles CHASE domain profile. 345 569 IPR006189 -
Seca8g00099 1318 SUPERFAMILY CheY-like 933 1068 IPR011006 -
Seca8g00099 1318 Gene3D - 694 915 IPR036890 -
Seca8g00099 1318 ProSiteProfiles Response regulatory domain profile. 1091 1228 IPR001789 GO:0000160
Seca8g00099 1318 FunFam Histidine kinase 4 349 576 - -
Seca8g00099 1318 Gene3D - 601 693 - -
Seca8g00099 1318 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 684 909 IPR036890 -
Seca8g00099 1318 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 617 696 IPR036097 GO:0000155|GO:0007165
Seca8g00099 1318 SMART HKATPase_4 742 914 IPR003594 -
Seca8g00099 1318 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 742 909 IPR003594 -
Seca8g00099 1318 CDD HATPase_EvgS-ArcB-TorS-like 747 909 - -
Seca8g00099 1318 ProSiteProfiles Histidine kinase domain profile. 637 914 IPR005467 -
Seca8g00099 1318 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00099 Seca-Chr8 1297572 1309480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00099 40 1228 Miscellaneous Gene Families AT5G35750 59.983 0.0 1377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g00099 CHASE 3.2e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00099 K14489 - gmx:100805107 2090.08