Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00097 ATGCAGGCATCTGAACAACATAGAAGTTCAAGTATGTACTATCAACAACTGCAGCAAATAGAAGCCTACTGCTTGCCACAGTATCGAACTCTAAATCATCAGTTATACTACAATGATGTAGGCCATGGAAACCACTTCTCTACTCCAAGTTCTTCTGAACTTTTCTGCACATTGGAGTCATCCTCTGCAACTGGCAGTTTCAATGTTTACAACTCTTCTTCAACTGTTAGTTTCTCACCTAATGGCAGCCCAATATCACAGCAAGATTCTCAGTCATATCCACCTGACCAGTATCATTCCCCTGACAATACCTATGGCTCTCCAAAGAGTGGTTCCTGCATAACCGATGATTTAAGTAGCTTCAAGCACAAGCTGAGAGAGTTGGAAAGTGTAATGTTTGGCCCTGACTCTGATAATCTTGATACTTATGACAGTGCAATCAGCAATGGAAACAACTTTGTTTCACTTGAGATGGACAGTTGGAGACAAACAATGGTGGCAATTTCTAGTAAAAACCTAAAGCACATCCTTATAGCATGTGCCAAAGCAATTGCAGACAATGATTTGCTAATGGCACAATGGCTGATGGATGAATTAAGGCAGATGGTGTCAGTTTCTGGTGAACCAATTCAAAGGTTGGGAGCATACATGTTGGAAGGACTTGTTGCACGATTGACTGCCTCAGGGAGTTCAATATACAAGTCTTTAAGATGCAAAGAGCCAGAAAGTTCTGATCTTCTCTCCTACATGCACATACTTTATGAGGTTTGCCCCTACTTCAAATTTGGATACATGTCAGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGATAGAGTTCATATAATTGATTTCCAAATTGCTCAAGGAAGCCAGTGGATCACTTTAATTCAGGCTTTTGCAGCTAGGCCTGGGGGGCCACCCCACATCCGGATTACAGGTATTGATGACTCAACATCAGCTTATGCCCGTGGAGGTGGACTGCATATAGTGGGAAAAAGGCTATCAAAGCTTGCTCAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATCTCTGGTTGTGATGTTCAACTACATAACCTTGGAATTCGACCAGGGGAAGCTCTGGCTGTAAATTTTGCATTCATGCTACATCACATGCCTGATGAAAGTGTCAGCACTCAGAATCATAGGGATAGGCTGTTGAGGTTGGTTAAGAGCCTATCACCAAAGGTGGTGACACTTGTTGAGCAAGAATCCAACACAAACACTGCTGCATTTTTTCCGCGGTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTGACTCTTCCCAGAGAGCATAAAGAGAGGATCAATGTTGAGCAGCATTGCTTAGCAAGAGACCTAGTTAACATCATAGCTTGTGAAGGGGTTGAGAGAGTGGAACGTCATGAGGTGCTTGGGAAGTGGAGGTCAAGATTTGCAATGGCTGGTTTCACTCCATATCCTTTGAGTTCATTGGTGAATGGCACCATAAAGAAATTGCTTGAGAACTACAGTGATAGATATAGACTTGAAGAGAGAGATGGAGCTCTATATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGTGCATGGAAATGA 1632 0.4234 MQASEQHRSSSMYYQQLQQIEAYCLPQYRTLNHQLYYNDVGHGNHFSTPSSSELFCTLESSSATGSFNVYNSSSTVSFSPNGSPISQQDSQSYPPDQYHSPDNTYGSPKSGSCITDDLSSFKHKLRELESVMFGPDSDNLDTYDSAISNGNNFVSLEMDSWRQTMVAISSKNLKHILIACAKAIADNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLTASGSSIYKSLRCKEPESSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGKRLSKLAQHFKVPFEFHAAAISGCDVQLHNLGIRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLEERDGALYLGWMNRDLVASCAWK. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00097 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 144 537 IPR005202 -
Seca8g00097 543 Pfam GRAS domain family 173 543 IPR005202 -
Seca8g00097 543 MobiDBLite consensus disorder prediction 78 110 - -
Seca8g00097 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00097 Seca-Chr8 1269086 1270717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00097 12 543 GRAS Transcription Factor Family AT5G48150 66.111 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca8g00097 GRAS 2.8e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00097 - - gmx:100808300 1023.08