Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00096 ATGGTTTCTTCAGACGAAAGTGCTGATCACAATGTTTCTTCTGATAATAAAGTACAGCAGGGAGTGAGTCCTCGCAGCGATATTAAATTGTCACAAGGGATTCATGATACTAAAATTCATTTGTCCAAATCAGAGAGGGCAAGAACTATTCCTTCTATTGTAGCTAAAAACCAAGTGAAGGATTCTGATGCTACTGCTCATGCCTTGCAATCAGAAACATTTGAGAAACATTTGCAGAGTCCTGGTACTCTTTCACATGAATTGCCTACATTGCAATCTGGTCAGGACAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGCGGAAATATGGCCAGAAACATGTTAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACACATCCTAACTGCCAAGCTAAAAAACAATTGCAGCAGTTAAATAATGGGCACATTACAGATTCTATTTGCATCGGTCAGCATAATCATCCTAAACCTCAATCCAACAACATACCACCACTTGATTCTGTTCTGCCTGTTGTTGAACAAGGACCACTCAAACCCTCTTTAGCAAATGTGGAAGACAAATCATTTGTTGAGCATGGATGTACGCCTCAACAGATCAAACCTTCACATTCTCTTCCAGCTTCAAAAGTTTCCCCAGCTGATGAGTTGAAAGCAGCACATTTACAACTGACAGTAAAGGATGAGGTTCACAACAATGAAGATCCTGAGCCAAAGCGGCTGAAGAAAGACAATAGTAATGCTGATGTCACTAGAACTGATGTGTCCACTCGTGAATCTCGTGTTGTCGTTCAGACTTCAAGTATGGTTGATTTTGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAACTAGTTAAAGGGAATACAAACCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGCCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACAACCTATGAGGGACAACATGATCATGAAATCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAATGGCCACCGATGGCAAGCTGGGAACCAAATCTGGAGGTAATAATACAGGGGAACGCAGCTGCTTGGACTCAAAATGCAGATCAAATGAGCAACTAAATAAGGAGCCAATTACTAAATCAAAGGATGGTGATATGGCTGAGTTTGGTATGATCAGCCTTTGTGATGAGGGTCCTGAAAGTAAATTAAGTGAGAAAGAACAAAAAAGTGATGACTCAGGTACCAAAGACGATTCTGTCAGCAATGACATCATATGCCATTCAGGTTCCAAAGTTCCTTGTAGATCAAATGAACAGCTGAAAGATGAGGTAAATACTACAATAGAAGGAAGTAAGGATTGCCTTAATGTGGTTGCTGGTCGTGATACTCCTAGTACAGAAAGTGAATTTAATAAGCAATCAACATCTGATGCAGAACCTGTCCAAAGCTAA 1494 0.4043 MVSSDESADHNVSSDNKVQQGVSPRSDIKLSQGIHDTKIHLSKSERARTIPSIVAKNQVKDSDATAHALQSETFEKHLQSPGTLSHELPTLQSGQDSPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQLNNGHITDSICIGQHNHPKPQSNNIPPLDSVLPVVEQGPLKPSLANVEDKSFVEHGCTPQQIKPSHSLPASKVSPADELKAAHLQLTVKDEVHNNEDPEPKRLKKDNSNADVTRTDVSTRESRVVVQTSSMVDFVNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPAKKHVERASHDSKIVITTYEGQHDHEIPPGRTVTHNAATNTHTMATDGKLGTKSGGNNTGERSCLDSKCRSNEQLNKEPITKSKDGDMAEFGMISLCDEGPESKLSEKEQKSDDSGTKDDSVSNDIICHSGSKVPCRSNEQLKDEVNTTIEGSKDCLNVVAGRDTPSTESEFNKQSTSDAEPVQS. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00096 497 SMART WRKY_cls 106 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 SMART WRKY_cls 280 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 MobiDBLite consensus disorder prediction 1 54 - -
Seca8g00096 497 FunFam WRKY transcription factor 95 166 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 1 27 - -
Seca8g00096 497 Gene3D WRKY domain 267 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 FunFam WRKY transcription factor 57 266 340 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 356 377 - -
Seca8g00096 497 SUPERFAMILY WRKY DNA-binding domain 102 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 ProSiteProfiles WRKY domain profile. 101 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 MobiDBLite consensus disorder prediction 78 97 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 356 497 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 413 432 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 31 45 - -
Seca8g00096 497 SUPERFAMILY WRKY DNA-binding domain 274 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 ProSiteProfiles WRKY domain profile. 275 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 Gene3D WRKY domain 98 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 MobiDBLite consensus disorder prediction 235 261 - -
Seca8g00096 497 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 355 IPR044810 GO:0003700
Seca8g00096 497 MobiDBLite consensus disorder prediction 378 397 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 235 256 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 475 497 - -
Seca8g00096 497 MobiDBLite consensus disorder prediction 433 466 - -
Seca8g00096 497 Pfam WRKY DNA -binding domain 281 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00096 497 Pfam WRKY DNA -binding domain 107 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00096 Seca-Chr8 1263511 1267971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00096 45 348 WRKY Transcription Factor Family AT2G04880 46.129 6.97e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g00096 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00096 K18834 - gmx:100781219 708.368